Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 7.3e-80 300.4 145 100.0
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 7.3e-80 300.4 145 100.0
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 7.3e-80 300.4 145 100.0
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 2.3e-78 295.4 145 99.3
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 6.8e-78 293.9 145 97.2
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 3.4e-77 291.6 145 96.6
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 1.3e-76 289.7 145 97.2
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 1.3e-76 289.7 145 97.2
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.3e-76 289.7 145 97.2
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.4e-75 286.2 145 95.9
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.4e-75 286.2 145 95.9
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.8e-75 285.8 145 95.2
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 1.2e-74 283.1 145 95.2
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.5e-74 281.6 144 94.4
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 4.6e-74 281.2 145 95.2
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 7.8e-74 280.4 141 96.5
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.3e-73 279.6 145 93.8
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 3.0e-73 278.5 145 93.8
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 3.9e-73 278.1 145 93.1
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 6.6e-73 277.3 145 92.4
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 6.6e-73 277.3 145 94.5
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 3.3e-72 275.0 145 93.8
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 3.3e-72 275.0 145 93.1
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 5.6e-72 274.2 145 93.1
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 5.6e-72 274.2 145 93.1
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 5.6e-72 274.2 145 93.1
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 9.5e-72 273.5 145 92.4
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-71 273.1 145 92.4
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-71 273.1 145 92.4
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-71 273.1 145 92.4
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-71 273.1 145 92.4
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.1e-71 272.3 145 91.7
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.1e-71 272.3 145 91.7
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 2.1e-71 272.3 145 93.1
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 4.7e-71 271.2 145 92.4
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 8.0e-71 270.4 145 92.4
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 1.1e-70 270.0 145 91.7
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.1e-70 270.0 145 91.7
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.1e-70 270.0 145 91.7
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 5.8e-69 264.2 140 92.1
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 2.9e-68 261.9 145 89.7
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.3e-65 253.1 133 92.5
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 1.3e-65 253.1 133 92.5
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 2.3e-65 252.3 133 94.0
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.0e-65 251.9 145 87.6
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.3e-64 248.1 133 91.7
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.8e-63 245.4 133 91.0
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 3.6e-63 245.0 142 84.5
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.9e-59 232.6 119 95.0
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 2.4e-59 232.3 145 79.3
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 3.2e-59 231.9 145 82.8
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 4.1e-59 231.5 145 80.7
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 4.1e-59 231.5 122 93.4
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 3.5e-58 228.4 145 80.0
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 3.0e-57 225.3 145 79.3
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 1.5e-56 223.0 108 100.0
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.4e-53 211.5 145 75.9
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 7.1e-51 204.1 111 90.1
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.3e-49 199.9 103 94.2
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.2e-47 191.0 100 91.0
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 4.4e-45 184.9 101 87.1
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.2e-43 178.3 104 84.6
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-39 166.4 89 89.9
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.8e-39 165.6 89 91.0
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 1.8e-38 162.9 91 89.0
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 6.7e-33 144.4 101 73.3
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-31 139.8 83 85.5
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 7.6e-29 131.0 89 73.0
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-27 127.1 115 62.6
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 1.5e-24 116.7 58 96.6
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 4.3e-24 115.2 160 42.5
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.9e-20 101.7 145 43.4
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 2.5e-19 99.4 51 94.1
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 3.5e-18 95.5 51 90.2
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 1.0e-17 94.0 116 50.0
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 1.0e-17 94.0 48 87.5
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 1.3e-17 93.6 150 44.0
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 3.9e-17 92.0 56 82.1
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.1e-17 91.7 48 89.6
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 6.7e-17 91.3 51 88.2
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.9e-16 89.7 51 86.3
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.7e-16 88.2 53 84.9
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 2.8e-15 85.9 120 35.0
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 2.8e-15 85.9 49 85.7
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 1.4e-14 83.6 47 87.2
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.8e-14 83.2 48 81.2
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-13 80.1 41 85.4
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.0e-13 79.7 52 78.8
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 2.0e-13 79.7 44 79.5
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.4e-13 79.0 44 86.4
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 1.1e-11 73.9 129 41.1
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 2.5e-11 72.8 35 91.4
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 3.6e-10 68.9 32 93.8
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-09 67.0 31 90.3
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 6.7e-09 64.7 33 84.8
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.1e-08 63.9 84 46.4
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 1.5e-08 63.5 29 96.6
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 1.5e-08 63.5 70 44.3
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 2.2e-07 59.7 104 39.4
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-06 57.4 77 45.5


User provided reference genes

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