Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028236 Sechium edule HOM05D003527 ORTHO05D004099 8.9e-66 253.4 127 100.0
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 4.0e-34 148.3 142 61.3
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 5.3e-34 147.9 143 59.4
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 4.5e-33 144.8 142 59.9
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 3.8e-24 115.2 139 51.1
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.5e-23 112.5 141 48.9
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 2.5e-23 112.5 140 49.3
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 3.2e-23 112.1 135 49.6
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 5.5e-23 111.3 128 50.0
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 7.1e-23 110.9 137 54.7
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.2e-22 110.2 136 50.7
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.6e-22 109.8 138 52.9
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.7e-22 109.0 135 49.6
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 6.0e-22 107.8 136 50.7
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 6.0e-22 107.8 140 47.1
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 1.0e-21 107.1 134 48.5
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 1.0e-21 107.1 138 45.7
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 1.3e-21 106.7 146 45.9
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 1.3e-21 106.7 130 50.0
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 1.8e-21 106.3 142 45.8
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.3e-21 105.9 132 49.2
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 3.0e-21 105.5 144 47.2
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 3.9e-21 105.1 140 50.7
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 5.1e-21 104.8 135 48.9
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 5.1e-21 104.8 131 48.9
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 6.7e-21 104.4 142 49.3
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 6.7e-21 104.4 142 46.5
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 6.7e-21 104.4 141 48.2
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 6.7e-21 104.4 142 44.4
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 8.7e-21 104.0 130 49.2
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.1e-20 103.6 130 47.7
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 1.9e-20 102.8 132 51.5
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 1.9e-20 102.8 130 50.0
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 1.9e-20 102.8 130 50.0
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 1.9e-20 102.8 130 50.0
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 2.5e-20 102.4 131 49.6
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 5.7e-20 101.3 143 48.3
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 7.4e-20 100.9 138 46.4
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 7.4e-20 100.9 131 51.1
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 9.7e-20 100.5 137 49.6
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 9.7e-20 100.5 137 46.0
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 1.3e-19 100.1 134 44.8
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 1.3e-19 100.1 138 47.8
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 1.6e-19 99.8 138 49.3
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 2.2e-19 99.4 139 44.6
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 2.2e-19 99.4 134 46.3
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 2.2e-19 99.4 136 47.1
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 2.2e-19 99.4 137 47.4
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.2e-19 99.4 136 50.7
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 2.8e-19 99.0 143 48.3
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 2.8e-19 99.0 130 49.2
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 2.8e-19 99.0 141 45.4
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 3.7e-19 98.6 138 47.1
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 4.8e-19 98.2 141 46.8
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 6.3e-19 97.8 137 48.9
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 8.2e-19 97.4 139 46.8
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 8.2e-19 97.4 139 46.8
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.2e-19 97.4 138 44.9
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.4e-18 96.7 144 45.8
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 1.4e-18 96.7 140 46.4
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 1.4e-18 96.7 135 48.1
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 1.8e-18 96.3 141 45.4
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 1.8e-18 96.3 133 45.9
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.8e-18 96.3 135 48.1
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 2.4e-18 95.9 139 46.8
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 3.1e-18 95.5 134 45.5
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 3.1e-18 95.5 141 45.4
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 3.1e-18 95.5 146 46.6
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.1e-18 95.1 129 47.3
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.3e-18 94.7 129 47.3
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.3e-18 94.7 129 47.3
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 6.9e-18 94.4 129 47.3
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.9e-18 94.4 134 45.5
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 6.9e-18 94.4 145 44.8
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 9.0e-18 94.0 137 46.0
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 9.0e-18 94.0 140 45.0
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.2e-17 93.6 142 45.8
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.2e-17 93.6 126 47.6
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 1.2e-17 93.6 141 45.4
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.5e-17 93.2 135 45.9
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 2.6e-17 92.4 139 46.0
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 2.6e-17 92.4 145 44.1
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.4e-17 92.0 129 46.5
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 4.5e-17 91.7 133 45.9
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 7.6e-17 90.9 136 45.6
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.0e-16 90.5 134 47.8
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.0e-16 90.5 127 46.5
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 1.0e-16 90.5 142 47.9
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 1.3e-16 90.1 145 44.8
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 1.3e-16 90.1 130 46.9
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 1.7e-16 89.7 151 41.7
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.2e-16 89.4 142 40.1
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 2.2e-16 89.4 128 45.3
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 2.2e-16 89.4 144 41.0
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 2.9e-16 89.0 136 43.4
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.9e-16 89.0 144 43.1
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.8e-16 88.6 141 44.0
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.8e-16 88.6 133 44.4
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.8e-16 88.6 141 44.0
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 3.8e-16 88.6 133 44.4
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 5.0e-16 88.2 138 42.8
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 5.0e-16 88.2 137 44.5
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 6.5e-16 87.8 142 45.8
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 8.5e-16 87.4 136 45.6
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.9e-15 86.3 145 44.8
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 2.5e-15 85.9 146 40.4
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.2e-15 85.5 141 41.1
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 4.2e-15 85.1 146 43.8
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 5.5e-15 84.7 174 35.1
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 9.4e-15 84.0 141 40.4
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 9.4e-15 84.0 149 41.6
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 1.2e-14 83.6 139 41.7
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.2e-14 83.6 140 40.0
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.6e-14 83.2 147 41.5
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 2.1e-14 82.8 145 40.0
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.1e-14 82.8 147 41.5
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 2.7e-14 82.4 152 40.8
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 3.6e-14 82.0 146 40.4
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 3.6e-14 82.0 140 42.1
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 4.6e-14 81.6 130 41.5
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 6.1e-14 81.3 140 43.6
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.9e-14 80.9 149 42.3
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 1.0e-13 80.5 154 40.9
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 1.4e-13 80.1 144 42.4
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.8e-13 79.7 139 39.6
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 2.3e-13 79.3 143 41.3
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 3.0e-13 79.0 151 37.1
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 3.0e-13 79.0 137 40.1
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 3.0e-13 79.0 154 39.0
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 5.1e-13 78.2 134 39.6
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 5.1e-13 78.2 156 39.7
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 5.1e-13 78.2 146 41.1
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 1.9e-12 76.3 151 37.7
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 1.9e-12 76.3 160 37.5
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.9e-12 76.3 153 39.9
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 4.3e-12 75.1 159 37.1
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 9.7e-12 73.9 155 36.8
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 9.7e-12 73.9 129 42.6
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 2.2e-11 72.8 161 35.4
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 2.8e-11 72.4 149 40.9
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 2.8e-11 72.4 150 40.7
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 4.8e-11 71.6 148 39.2
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 4.8e-11 71.6 150 40.7
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 6.3e-11 71.2 142 41.5
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 1.1e-10 70.5 150 40.0
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 1.4e-10 70.1 141 41.1
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.8e-10 69.7 130 41.5
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 1.8e-10 69.7 114 43.9
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 1.8e-10 69.7 141 36.9
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 3.1e-10 68.9 151 37.1
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 5.3e-10 68.2 122 43.4
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 9.1e-10 67.4 150 39.3
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.0e-09 66.2 150 36.0
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 2.0e-09 66.2 153 35.9
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 2.6e-09 65.9 142 37.3
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 3.4e-09 65.5 145 33.8
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 4.5e-09 65.1 140 37.1
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 7.7e-09 64.3 106 46.2
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 7.7e-09 64.3 145 36.6
Ca_12948_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 1.3e-08 63.5 65 50.8
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 2.9e-08 62.4 132 40.9
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 6.5e-08 61.2 154 36.4
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 6.5e-08 61.2 145 33.8
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 1.1e-07 60.5 87 47.1
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 1.4e-07 60.1 92 42.4
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.9e-07 59.7 99 44.4
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 2.5e-07 59.3 123 39.0
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 3.2e-07 58.9 54 59.3
Actinidia34400 Actinidia chinensis HOM05D003527 ORTHO05D004099 7.2e-07 57.8 56 53.6
Dinv35615 Davidia involucrata HOM05D003527 ORTHO05D004099 2.1e-06 56.2 59 50.8
RcHm_v2.0_Chr2g0141581 Rosa chinensis HOM05D003527 ORTHO05D004099 4.7e-06 55.1 52 51.9
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 6.1e-06 54.7 107 36.4
Lalb_Chr03g0042111 Lupinus albus HOM05D003527 ORTHO05D004099 7.9e-06 54.3 49 53.1


User provided reference genes

Program Settings