Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 2.0e-203 712.2 355 100.0
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 7.0e-177 624.0 355 85.9
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 2.7e-176 622.1 355 86.2
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 3.5e-176 621.7 355 86.2
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 2.6e-147 525.8 355 71.8
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.2e-145 518.8 355 70.7
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 4.2e-145 518.5 355 71.0
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 5.4e-145 518.1 355 70.7
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 7.1e-145 517.7 355 71.3
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 1.0e-143 513.8 355 69.0
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 5.6e-142 508.1 354 69.2
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 6.2e-141 504.6 355 70.4
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.1e-140 503.8 355 70.7
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.5e-139 500.0 355 65.9
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 1.2e-136 490.3 354 66.9
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 1.7e-135 486.5 355 64.5
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.9e-135 485.3 356 65.2
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 2.5e-134 482.6 356 64.9
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 2.5e-134 482.6 356 64.9
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 7.3e-134 481.1 355 63.7
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 1.5e-131 473.4 355 66.5
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 5.8e-131 471.5 328 68.9
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 5.8e-131 471.5 343 66.5
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 3.8e-130 468.8 348 64.1
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 1.1e-129 467.2 356 65.4
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 2.4e-129 466.1 356 64.0
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 7.1e-129 464.5 355 63.9
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 6.0e-128 461.5 348 63.5
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 1.1e-126 457.2 355 61.7
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 1.1e-126 457.2 299 72.9
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.5e-126 456.8 348 62.4
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.9e-126 456.4 345 63.5
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 3.3e-126 455.7 333 66.1
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 4.3e-126 455.3 363 59.5
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 7.4e-126 454.5 348 62.4
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 4.8e-125 451.8 337 67.4
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 4.0e-124 448.7 355 60.6
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.3e-122 443.7 333 63.7
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 4.9e-122 441.8 333 63.1
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 6.4e-122 441.4 355 60.0
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.1e-121 440.7 354 58.2
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 4.2e-121 438.7 355 59.4
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 7.1e-121 438.0 355 58.9
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 7.1e-121 438.0 355 59.7
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 3.5e-120 435.6 344 61.0
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 4.6e-120 435.3 333 63.7
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 6.0e-120 434.9 355 57.7
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 6.0e-120 434.9 336 63.1
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 5.1e-119 431.8 355 57.7
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 5.6e-118 428.3 352 59.7
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 1.6e-117 426.8 355 58.0
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 3.7e-117 425.6 355 57.2
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 3.7e-117 425.6 354 57.1
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 4.8e-117 425.2 399 57.1
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 6.2e-117 424.9 355 58.0
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 8.2e-117 424.5 315 63.8
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 1.1e-116 424.1 322 64.0
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 2.4e-116 422.9 355 58.3
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.1e-116 422.5 287 70.4
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 1.2e-115 420.6 314 63.4
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 1.5e-115 420.2 355 57.7
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 1.5e-115 420.2 336 61.3
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 2.0e-115 419.9 355 57.5
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 2.5e-113 412.9 355 56.3
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 2.5e-113 412.9 355 54.6
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 3.2e-113 412.5 318 62.9
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 4.2e-113 412.1 346 56.1
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 1.6e-112 410.2 338 57.7
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 1.6e-112 410.2 334 59.0
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 3.5e-112 409.1 313 62.3
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 1.8e-111 406.8 355 59.2
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 5.1e-111 405.2 346 56.4
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.3e-110 402.5 328 61.6
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 4.3e-110 402.1 355 57.7
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 9.7e-110 401.0 354 57.9
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 9.0e-108 394.4 352 54.5
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 2.2e-106 389.8 355 53.2
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 8.5e-106 387.9 327 59.3
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 9.4e-105 384.4 332 55.7
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 9.4e-105 384.4 355 56.1
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 3.6e-104 382.5 347 54.5
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 1.0e-103 380.9 355 54.1
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 3.9e-103 379.0 348 55.7
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 2.0e-102 376.7 246 71.5
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 2.4e-100 369.8 355 51.0
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 1.5e-99 367.1 355 53.0
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 2.5e-97 359.8 355 52.4
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.2e-96 357.5 246 68.7
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 2.3e-95 353.2 352 51.4
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 4.1e-92 342.4 348 53.2
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 1.0e-90 337.8 355 51.0
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 2.2e-90 336.7 355 49.6
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.8e-87 327.0 340 47.9
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 9.7e-86 321.2 338 47.3
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 1.7e-85 320.5 354 47.5
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 1.2e-83 314.3 225 67.1
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 1.3e-82 310.8 303 52.1
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 7.2e-81 305.1 299 50.2
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 6.1e-80 302.0 290 52.8
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 8.0e-80 301.6 248 60.9
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.6e-78 296.6 344 48.5
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.2e-70 271.2 205 65.9
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 1.4e-55 221.1 182 58.2
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 4.9e-45 186.0 153 60.8
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 4.6e-43 179.5 344 32.0
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 1.6e-40 171.0 221 42.5
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 8.1e-40 168.7 199 47.2
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 4.3e-33 146.4 165 46.7
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 6.2e-32 142.5 354 29.4
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 4.4e-22 109.8 253 30.0
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.8e-16 90.5 169 34.9
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 6.9e-15 85.9 141 39.7
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 1.5e-14 84.7 249 28.1
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 4.6e-11 73.2 198 30.3
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 5.1e-10 69.7 195 28.2
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 1.5e-09 68.2 161 32.3
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 1.5e-09 68.2 161 32.3
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 4.3e-09 66.6 191 29.8
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 7.4e-09 65.9 187 29.4
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 1.6e-08 64.7 188 29.8
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 2.1e-08 64.3 168 31.5
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 2.1e-08 64.3 154 31.8
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 2.8e-08 63.9 179 29.6
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 2.8e-08 63.9 172 32.6
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 4.8e-08 63.2 168 31.0
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 4.8e-08 63.2 189 29.1
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 6.2e-08 62.8 186 31.2
Cc01_g05550 Coffea canephora HOM05D000001 ORTHO05D000003 1.1e-07 62.0 274 21.9
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 1.1e-07 62.0 165 30.3
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 3.1e-07 60.5 153 30.7
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 1.2e-06 58.5 195 25.1
CBR_g10841 Chara braunii HOM05D001779 ORTHO05D001753 1.5e-06 58.2 129 29.5
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 1.5e-06 58.2 47 53.2
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.0e-06 57.8 196 26.0
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.0e-06 57.8 196 26.0
GSVIVG01012216001 Vitis vinifera HOM05D005622 ORTHO05D002854 4.5e-06 56.6 134 26.9
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 5.8e-06 56.2 171 29.2
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 1.0e-05 55.5 110 29.1


User provided reference genes

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