Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 3.0e-48 195.3 134 100.0
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 1.6e-25 119.8 79 75.9
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.9e-19 98.6 57 80.7
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 4.9e-14 81.6 53 73.6
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 4.9e-14 81.6 53 73.6
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 4.1e-13 78.6 49 73.5
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.2e-12 77.0 81 53.1
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 3.5e-12 75.5 79 54.4
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 2.3e-11 72.8 60 55.0
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 3.0e-11 72.4 92 47.8
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.0e-11 72.4 84 45.2
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.0e-11 72.4 84 45.2
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 3.9e-11 72.0 67 56.7
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.9e-11 72.0 84 45.2
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.9e-11 72.0 87 46.0
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 6.6e-11 71.2 49 65.3
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.6e-11 71.2 64 57.8
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.6e-11 71.2 64 57.8
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.5e-10 70.1 49 65.3
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.9e-10 69.7 49 65.3
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.5e-10 69.3 48 64.6
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.5e-10 69.3 91 45.1
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 2.5e-10 69.3 88 45.5
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 3.3e-10 68.9 61 55.7
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.3e-10 68.6 90 43.3
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.3e-10 68.6 50 62.0
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.3e-10 68.6 50 62.0
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 5.6e-10 68.2 106 39.6
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.6e-10 68.2 51 60.8
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 5.6e-10 68.2 87 44.8
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 5.6e-10 68.2 73 52.1
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 7.3e-10 67.8 77 48.1
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 7.3e-10 67.8 92 45.7
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 7.3e-10 67.8 53 54.7
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 9.6e-10 67.4 66 54.5
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 9.6e-10 67.4 49 59.2
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 9.6e-10 67.4 49 57.1
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 9.6e-10 67.4 95 48.4
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.2e-09 67.0 92 43.5
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.2e-09 67.0 92 42.4
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.2e-09 67.0 88 44.3
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.2e-09 67.0 92 46.7
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.1e-09 66.2 88 46.6
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.1e-09 66.2 56 55.4
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 2.1e-09 66.2 96 41.7
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.6e-09 65.5 55 54.5
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.2e-09 64.7 48 60.4
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 6.2e-09 64.7 48 60.4
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 6.2e-09 64.7 74 45.9
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 6.2e-09 64.7 51 60.8
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 6.2e-09 64.7 87 46.0
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 8.1e-09 64.3 91 45.1
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.1e-08 63.9 53 60.4
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 1.1e-08 63.9 89 42.7
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 1.1e-08 63.9 87 43.7
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.1e-08 63.9 55 52.7
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 1.4e-08 63.5 74 50.0
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 1.8e-08 63.2 85 45.9
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.8e-08 63.2 64 53.1
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 2.4e-08 62.8 74 44.6
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 2.4e-08 62.8 82 41.5
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.4e-08 62.8 98 40.8
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.4e-08 62.8 66 48.5
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 3.1e-08 62.4 68 51.5
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 3.1e-08 62.4 49 55.1
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.1e-08 62.4 88 43.2
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 3.1e-08 62.4 61 45.9
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 4.0e-08 62.0 48 60.4
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.0e-08 62.0 68 50.0
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 5.2e-08 61.6 57 52.6
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 5.2e-08 61.6 63 50.8
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 5.2e-08 61.6 96 43.8
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 6.8e-08 61.2 89 38.2
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 6.8e-08 61.2 76 46.1
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 6.8e-08 61.2 75 48.0
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 6.8e-08 61.2 52 55.8
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.8e-08 61.2 50 58.0
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 8.9e-08 60.8 49 57.1
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 8.9e-08 60.8 49 55.1
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 8.9e-08 60.8 49 55.1
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 8.9e-08 60.8 49 55.1
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 8.9e-08 60.8 49 55.1
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 8.9e-08 60.8 95 37.9
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 8.9e-08 60.8 95 40.0
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.2e-07 60.5 82 40.2
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.5e-07 60.1 63 52.4
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.5e-07 60.1 68 50.0
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.5e-07 60.1 98 42.9
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 2.0e-07 59.7 106 36.8
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.0e-07 59.7 75 44.0
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 2.6e-07 59.3 49 51.0
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 2.6e-07 59.3 100 40.0
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 2.6e-07 59.3 77 45.5
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 2.6e-07 59.3 87 40.2
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 2.6e-07 59.3 63 46.0
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 3.4e-07 58.9 50 56.0
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 3.4e-07 58.9 50 56.0
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 3.4e-07 58.9 50 60.0
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 3.4e-07 58.9 77 45.5
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 3.4e-07 58.9 88 37.5
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 4.4e-07 58.5 50 52.0
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 4.4e-07 58.5 100 38.0
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 4.4e-07 58.5 75 40.0
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 4.4e-07 58.5 75 44.0
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 4.4e-07 58.5 83 43.4
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 5.8e-07 58.2 49 55.1
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 5.8e-07 58.2 90 38.9
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 7.6e-07 57.8 49 53.1
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 7.6e-07 57.8 49 55.1
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 9.9e-07 57.4 75 45.3
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.3e-06 57.0 95 40.0
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.3e-06 57.0 57 50.9
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 1.3e-06 57.0 51 54.9
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 1.3e-06 57.0 56 48.2
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.3e-06 57.0 74 44.6
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.7e-06 56.6 49 53.1
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 1.7e-06 56.6 78 42.3
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.7e-06 56.6 75 42.7
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 2.2e-06 56.2 49 53.1
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 2.2e-06 56.2 75 44.0
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 2.2e-06 56.2 49 51.0
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.2e-06 56.2 51 51.0
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 2.2e-06 56.2 73 42.5
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 2.2e-06 56.2 61 45.9
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 2.2e-06 56.2 52 53.8
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 2.9e-06 55.8 88 38.6
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 3.8e-06 55.5 89 43.8
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 4.9e-06 55.1 75 44.0
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 4.9e-06 55.1 71 46.5
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 4.9e-06 55.1 48 54.2
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.9e-06 55.1 88 38.6
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 6.4e-06 54.7 48 54.2
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 6.4e-06 54.7 46 52.2
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 8.4e-06 54.3 59 50.8
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 8.4e-06 54.3 90 38.9


User provided reference genes

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