Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 2035.4 1046 100.0
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1755.0 1004 89.7
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1719.9 1000 88.2
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1682.9 1008 86.5
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1653.6 1056 82.3
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1471.8 1022 75.3
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1468.8 1023 75.5
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1453.3 1019 75.4
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1449.9 1021 74.3
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1437.2 1021 75.0
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1434.9 1022 72.9
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1434.5 1023 74.7
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1429.8 1020 73.5
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1426.8 1021 73.3
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1419.8 1025 73.1
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1419.4 1018 73.9
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1417.9 1026 73.8
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1417.9 1021 73.5
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1414.4 1020 73.6
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1413.3 1020 72.9
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1412.9 1031 72.6
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1407.5 1017 74.3
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1407.5 1017 74.3
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1403.7 1051 72.0
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1403.3 1010 72.9
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1398.6 1019 71.7
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1397.1 1037 71.4
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1396.7 1023 73.0
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1395.6 1021 72.6
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1391.7 1013 73.0
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1390.6 1010 72.3
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1390.2 1022 71.3
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1389.4 1002 72.8
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1389.4 1024 72.8
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1387.9 1022 71.1
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1385.2 1053 71.6
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1384.8 1022 71.0
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1380.9 1011 71.8
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1378.6 1011 72.2
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1378.2 1056 70.4
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1373.6 1231 62.3
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1372.8 1010 72.5
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1369.0 1024 71.0
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1366.7 1091 67.8
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1359.7 1026 70.3
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1357.8 1018 69.3
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1356.7 1035 68.5
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1356.3 1023 68.9
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1354.7 1015 70.2
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1352.8 1024 70.2
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1349.0 1018 68.9
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1347.0 1011 70.8
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1346.6 1044 67.7
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1346.3 1032 68.6
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1343.9 1011 70.2
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1340.1 1015 71.0
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1338.9 1011 69.8
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1333.9 1021 69.7
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1328.5 1021 69.7
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1328.2 1010 68.7
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1325.1 1051 68.8
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1324.7 1022 69.2
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1323.5 1020 67.7
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1317.0 1026 68.7
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1312.4 1014 69.0
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1308.5 1027 69.3
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1306.2 924 73.9
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1304.3 1022 68.8
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1303.9 1019 67.4
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1302.3 1010 67.2
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1296.6 1010 67.0
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1295.4 1011 67.0
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1295.0 1011 66.9
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1295.0 1023 68.3
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1290.8 1012 66.6
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1290.4 1011 66.8
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1288.9 1017 67.7
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1287.3 1012 66.6
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1283.5 1014 66.2
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1278.8 1013 66.3
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1278.5 1033 65.5
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1276.9 1025 65.6
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1270.8 1161 60.8
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1270.0 1012 66.2
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1265.8 1016 65.8
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1251.1 1016 66.9
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1235.3 1009 68.2
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1227.2 1023 64.3
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1223.8 846 75.1
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1219.5 847 75.6
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1219.5 1018 63.8
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1214.5 1020 64.5
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1209.1 1005 66.2
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1208.4 1017 62.5
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1208.0 1071 61.3
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1194.1 830 74.0
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1192.9 1028 62.9
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1185.2 1017 62.6
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1170.6 1012 62.7
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1168.3 1017 61.3
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1168.3 924 66.7
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1166.8 1015 61.6
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1148.7 1012 60.9
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1113.2 1005 59.8
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1096.6 1035 58.7
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1095.9 1013 58.5
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1095.9 1013 58.5
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1087.8 1013 59.0
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1083.9 1011 58.8
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1080.5 1012 58.4
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 1.4e-311 1073.2 1007 57.9
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 2.0e-304 1049.3 1051 57.2
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 1.5e-299 1033.1 787 70.4
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.0e-292 1010.4 1058 54.3
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 1.5e-291 1006.5 1119 53.4
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 1.1e-283 980.3 764 68.5
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.0e-263 914.1 633 73.8
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 2.3e-252 876.3 1064 50.2
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 2.9e-247 859.4 1058 48.1
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.1e-246 857.4 1050 48.8
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 3.3e-243 845.9 1078 47.4
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 4.8e-242 842.0 615 68.6
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 2.9e-239 832.8 1011 49.3
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 4.7e-229 798.9 949 51.6
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 5.7e-227 792.0 585 71.5
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 2.3e-207 726.9 561 69.7
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 2.5e-206 723.4 561 70.9
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 8.9e-196 688.3 922 45.4
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 2.2e-178 630.6 420 77.6
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 4.2e-177 626.3 572 59.1
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.4e-164 584.7 418 73.2
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 2.4e-164 583.9 425 72.2
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 2.2e-154 550.8 452 69.9
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 1.1e-142 511.9 362 70.7
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.0e-103 382.5 258 75.2
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 3.1e-95 354.4 335 62.1
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 5.8e-94 350.1 223 82.1
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 3.6e-64 251.1 218 64.7
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 6.2e-64 250.4 277 53.8
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 1.8e-39 169.1 136 69.1
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 6.5e-37 160.6 119 68.9
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 2.5e-36 158.7 217 46.5
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 1.2e-35 156.4 233 42.5
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 2.6e-30 138.7 131 52.7
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 4.5e-30 137.9 195 44.6
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.6e-27 129.4 144 49.3
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 4.1e-23 114.8 84 63.1
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 2.7e-19 102.1 131 43.5
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 3.6e-19 101.7 88 61.4
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 1.0e-18 100.1 61 72.1
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 3.9e-18 98.2 61 70.5
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 3.9e-18 98.2 61 70.5
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 2.0e-17 95.9 61 68.9
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 2.0e-17 95.9 92 52.2
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 2.6e-17 95.5 133 44.4
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 3.3e-17 95.1 172 40.1
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 5.7e-17 94.4 73 67.1
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 1.3e-16 93.2 77 64.9
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 1.7e-16 92.8 58 69.0
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 6.5e-13 80.9 237 31.2
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 9.4e-12 77.0 76 52.6
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 2.8e-08 65.5 32 96.9
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 2.4e-07 62.4 85 45.9
TPR.G35747 Trifolium pratense HOM05D004002 ORTHO05D004668 7.0e-07 60.8 114 35.1
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 1.6e-06 59.7 48 62.5


User provided reference genes

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