Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 0.0e+00 1547.3 761 100.0
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 0.0e+00 1220.7 877 73.0
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 0.0e+00 1218.0 876 72.8
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 0.0e+00 1182.9 978 65.7
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 1.7e-199 700.3 805 53.2
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 2.8e-199 699.5 790 53.4
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 1.2e-197 694.1 916 49.3
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 1.5e-192 677.2 801 51.8
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 1.5e-184 650.6 765 52.2
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 3.2e-179 632.9 903 47.5
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 9.4e-179 631.3 811 50.3
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 6.8e-177 625.2 832 47.4
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 6.3e-175 618.6 798 49.7
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 3.2e-171 606.3 883 46.3
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 3.6e-170 602.8 783 49.7
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 2.3e-169 600.1 784 50.1
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 4.4e-168 595.9 830 47.3
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 4.4e-168 595.9 927 45.1
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 9.8e-168 594.7 795 47.5
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.3e-167 594.3 785 48.7
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 7.0e-166 588.6 783 48.3
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 9.1e-166 588.2 795 48.3
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 1.0e-164 584.7 809 47.1
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 4.2e-163 579.3 527 62.6
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 5.5e-163 578.9 510 61.0
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 6.1e-162 575.5 877 45.2
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 1.0e-161 574.7 786 48.2
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 1.4e-161 574.3 781 48.7
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 4.0e-161 572.8 936 43.9
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 4.0e-161 572.8 787 48.9
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 8.9e-161 571.6 791 48.9
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 1.2e-160 571.2 757 47.7
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 1.2e-160 571.2 809 46.4
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 1.3e-159 567.8 509 61.9
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.7e-159 567.4 830 46.1
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 6.3e-159 565.5 786 45.9
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 6.3e-159 565.5 490 62.2
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 4.1e-158 562.8 771 47.3
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 7.0e-158 562.0 777 47.1
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 1.6e-157 560.8 780 47.2
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 1.9e-155 553.9 838 45.1
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 9.5e-155 551.6 771 47.2
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 9.5e-155 551.6 762 46.6
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 2.1e-154 550.4 791 47.8
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 2.8e-154 550.1 975 41.4
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 1.0e-153 548.1 948 42.8
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.8e-153 547.4 918 43.1
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 3.1e-153 546.6 1071 38.3
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 1.2e-152 544.7 544 58.1
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 1.5e-152 544.3 870 44.0
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 4.4e-152 542.7 709 49.8
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.3e-151 541.2 531 58.8
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 2.2e-151 540.4 933 40.8
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 2.2e-151 540.4 823 44.8
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 4.9e-151 539.3 759 46.1
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 6.4e-151 538.9 918 42.5
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.1e-150 536.2 795 45.7
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 1.2e-149 534.6 894 42.7
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 1.6e-149 534.3 978 42.3
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 2.5e-147 526.9 714 48.0
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 4.7e-146 522.7 752 44.5
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 1.8e-145 520.8 836 44.5
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 6.8e-145 518.8 831 44.9
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 1.2e-144 518.1 747 46.9
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 2.0e-144 517.3 923 41.9
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 2.6e-144 516.9 754 44.7
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 4.4e-144 516.2 805 44.8
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 4.4e-144 516.2 810 43.0
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 7.1e-142 508.8 705 47.5
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 9.2e-142 508.4 501 57.5
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 6.0e-141 505.8 798 44.2
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 3.0e-140 503.4 523 56.2
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 3.9e-140 503.1 748 44.5
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 1.9e-139 500.7 938 39.6
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 4.3e-139 499.6 868 42.5
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 7.3e-139 498.8 763 44.2
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 6.2e-138 495.7 941 40.6
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 5.8e-136 489.2 890 40.1
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 7.6e-136 488.8 763 43.9
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 6.4e-135 485.7 839 41.4
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 3.9e-132 476.5 413 60.8
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 9.6e-131 471.9 411 60.6
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 4.7e-130 469.5 473 56.9
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 2.4e-129 467.2 751 42.2
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 5.2e-129 466.1 752 42.3
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 9.9e-128 461.8 905 39.3
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 1.7e-127 461.1 849 39.2
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 4.9e-127 459.5 752 41.4
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 1.1e-123 448.4 776 40.2
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 1.5e-123 448.0 779 40.7
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 1.9e-123 447.6 780 40.1
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 9.0e-121 438.7 796 40.8
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 1.9e-118 431.0 648 46.3
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 6.0e-117 426.0 459 52.3
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 2.3e-116 424.1 890 38.9
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 1.1e-115 421.8 393 58.5
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 1.2e-112 411.8 770 39.0
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 1.5e-112 411.4 828 38.2
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 1.6e-106 391.3 406 54.7
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 6.5e-103 379.4 255 73.7
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 1.3e-100 371.7 745 39.6
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 8.4e-95 352.4 652 39.9
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.8e-92 344.7 431 49.7
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 4.5e-80 303.5 510 39.6
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 1.1e-73 282.3 284 58.1
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 1.0e-52 212.6 553 34.5
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 1.6e-40 172.2 199 43.2
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.9e-33 148.7 179 46.9
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 1.7e-31 142.1 111 69.4
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 1.7e-31 142.1 111 65.8
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 1.2e-21 109.4 139 52.5
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 1.6e-16 92.4 83 62.7
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 2.7e-16 91.7 77 64.9
Dinv19923 Davidia involucrata HOM05D006304 ORTHO05D008584 2.1e-13 82.0 120 45.0
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 1.2e-11 76.3 84 54.8
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.7e-10 72.4 132 43.9


User provided reference genes

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