Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 6.6e-125 450.7 220 100.0
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 2.6e-81 305.8 201 77.6
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 5.5e-79 298.1 232 68.5
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.2e-78 297.0 225 70.7
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 1.5e-44 183.7 238 46.6
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 2.8e-43 179.5 242 46.3
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 7.0e-42 174.9 236 43.6
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 3.5e-41 172.6 244 45.1
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 4.5e-41 172.2 237 43.5
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 4.5e-41 172.2 234 43.2
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.3e-40 170.6 161 57.1
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.3e-40 170.6 170 52.9
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.7e-40 170.2 224 44.2
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.7e-40 170.2 234 45.3
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 2.2e-40 169.9 238 43.3
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 2.9e-40 169.5 229 45.0
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.9e-40 169.5 233 41.6
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 8.5e-40 167.9 244 43.0
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 1.1e-39 167.5 236 43.6
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.5e-39 167.2 225 43.1
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 3.2e-39 166.0 248 40.7
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 3.2e-39 166.0 248 40.7
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 3.2e-39 166.0 191 46.1
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 5.5e-39 165.2 232 42.7
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 5.5e-39 165.2 241 41.9
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 7.2e-39 164.9 229 45.9
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 1.2e-38 164.1 237 42.2
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 3.6e-38 162.5 237 40.9
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 8.0e-38 161.4 194 49.0
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 8.0e-38 161.4 194 49.0
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 1.0e-37 161.0 207 48.3
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.4e-37 160.6 229 41.9
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 1.8e-37 160.2 250 40.0
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 2.3e-37 159.8 255 41.6
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 2.3e-37 159.8 203 45.3
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.0e-37 159.1 191 49.7
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 4.0e-37 159.1 209 42.6
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 5.2e-37 158.7 194 49.0
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 8.8e-37 157.9 244 39.3
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 8.8e-37 157.9 174 48.3
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.2e-36 157.5 233 44.2
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.2e-36 157.5 174 48.3
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.2e-36 157.5 187 44.9
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 4.4e-36 155.6 245 42.4
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 5.7e-36 155.2 168 48.2
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 9.8e-36 154.5 238 42.9
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.7e-35 153.7 186 44.1
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 2.2e-35 153.3 196 44.4
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 2.2e-35 153.3 195 46.2
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 2.2e-35 153.3 192 46.4
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 2.8e-35 152.9 151 50.3
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.7e-35 152.5 167 47.3
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 6.3e-35 151.8 251 38.6
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 8.3e-35 151.4 235 41.3
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 8.3e-35 151.4 174 46.6
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.1e-34 151.0 146 54.1
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.4e-34 150.6 195 46.7
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.4e-34 150.6 178 47.2
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.4e-34 150.6 159 49.1
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.8e-34 150.2 194 43.8
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.8e-34 150.2 194 43.8
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.8e-34 150.2 182 46.2
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.4e-34 149.8 242 40.1
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 4.1e-34 149.1 174 45.4
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 5.4e-34 148.7 225 41.8
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 5.4e-34 148.7 163 47.2
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 5.4e-34 148.7 245 40.4
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 5.4e-34 148.7 239 38.5
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 7.0e-34 148.3 194 42.3
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 9.1e-34 147.9 196 42.3
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 9.1e-34 147.9 196 42.3
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.2e-33 147.5 245 40.4
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.6e-33 147.1 227 41.0
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.6e-33 147.1 227 41.0
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.6e-33 147.1 245 43.3
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 2.0e-33 146.7 164 45.7
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 2.0e-33 146.7 164 45.7
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.0e-33 146.7 236 40.3
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 3.5e-33 146.0 243 40.3
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 3.5e-33 146.0 237 39.2
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 4.5e-33 145.6 164 47.0
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.5e-33 145.6 239 38.5
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 5.9e-33 145.2 168 45.8
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 7.7e-33 144.8 155 49.7
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.0e-32 144.4 236 36.4
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.0e-32 144.4 179 45.8
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.3e-32 144.1 229 40.2
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-32 144.1 229 40.2
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.7e-32 143.7 163 49.7
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.7e-32 143.7 174 44.3
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.7e-32 143.7 190 38.9
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.9e-32 142.9 184 45.1
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.9e-32 142.9 229 39.7
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.9e-32 142.9 229 39.7
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 2.9e-32 142.9 153 49.0
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 3.8e-32 142.5 229 39.7
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 3.8e-32 142.5 236 39.4
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 5.0e-32 142.1 197 44.7
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 6.5e-32 141.7 185 42.7
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.5e-31 140.6 180 46.1
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.5e-31 139.8 171 45.0
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 2.5e-31 139.8 169 44.4
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 2.5e-31 139.8 202 40.6
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 2.5e-31 139.8 181 40.9
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 9.5e-31 137.9 165 44.2
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.2e-30 137.5 192 41.1
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.8e-30 136.3 252 36.9
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 5.2e-29 132.1 158 49.4
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 5.2e-29 132.1 246 35.8
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.3e-27 127.5 157 42.0
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.7e-27 127.1 155 45.2
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.1e-26 124.4 170 41.8
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.1e-26 124.4 148 45.9
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.8e-26 123.6 168 41.7
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 4.1e-26 122.5 195 39.0
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 7.8e-25 118.2 139 47.5
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 7.8e-25 118.2 161 38.5
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 8.6e-24 114.8 201 38.8
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 8.6e-24 114.8 249 35.3
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 1.9e-23 113.6 180 38.9
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 3.3e-23 112.8 186 36.0
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 7.3e-23 111.7 194 36.1
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 9.5e-23 111.3 184 41.3
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.2e-22 110.9 158 40.5
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 1.6e-22 110.5 194 39.2
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 3.6e-22 109.4 159 34.0
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 6.1e-22 108.6 188 36.2
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 6.1e-22 108.6 188 36.2
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 6.1e-22 108.6 175 36.0
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 8.0e-22 108.2 169 41.4
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.0e-21 107.8 156 39.7
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.0e-21 107.8 171 37.4
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.4e-21 107.5 189 39.2
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.3e-21 106.7 186 35.5
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.0e-21 106.3 186 35.5
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 5.2e-21 105.5 177 32.8
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.8e-21 105.1 184 35.3
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 4.4e-20 102.4 196 36.2
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.7e-20 102.1 111 49.5
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 5.7e-20 102.1 192 37.5
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 9.8e-20 101.3 191 33.0
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.3e-19 100.9 191 33.5
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 2.9e-19 99.8 189 37.6
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 3.7e-19 99.4 160 30.0
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.4e-18 96.7 175 29.7
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 4.1e-18 95.9 162 32.7
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 7.0e-18 95.1 150 37.3
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.7e-17 93.2 175 30.9
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 7.8e-17 91.7 152 32.2
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.0e-16 91.3 166 32.5
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.5e-15 87.4 162 34.0
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.5e-15 86.7 199 30.2
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 2.8e-14 83.2 169 33.1
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 8.0e-14 81.6 111 39.6
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.4e-13 80.9 170 31.8
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.8e-13 80.5 170 30.6
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.9e-11 73.2 91 44.0
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 6.4e-11 72.0 89 41.6
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.2e-09 67.8 66 53.0
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.7e-09 66.6 199 25.6
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 5.0e-08 62.4 93 38.7
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.1e-07 61.2 71 42.3
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 5.6e-07 58.9 81 39.5
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.6e-07 58.9 155 30.3


User provided reference genes

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