Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.9e-139 499.2 252 100.0
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 8.4e-116 420.6 261 85.1
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 1.5e-112 409.8 261 82.4
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 2.0e-109 399.4 261 80.5
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 7.9e-90 334.3 254 70.9
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.9e-89 332.0 252 72.2
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 1.5e-88 330.1 250 72.4
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.5e-88 330.1 250 72.0
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.9e-88 329.7 252 71.8
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 1.9e-88 329.7 245 71.0
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 4.3e-88 328.6 251 70.1
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 1.3e-87 327.0 253 68.8
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 1.6e-87 326.6 256 69.9
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.1e-87 326.2 252 70.2
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 2.8e-87 325.9 249 70.7
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 3.7e-87 325.5 252 69.4
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 4.8e-87 325.1 244 70.1
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 5.3e-86 321.6 250 70.0
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 9.0e-86 320.9 255 68.6
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 1.2e-85 320.5 255 68.6
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 2.0e-85 319.7 249 69.5
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 5.8e-85 318.2 250 69.6
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 5.8e-85 318.2 257 68.5
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.3e-84 317.0 253 68.4
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 2.2e-84 316.2 251 68.1
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 2.9e-84 315.8 242 71.1
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 2.9e-84 315.8 242 66.5
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 2.9e-84 315.8 251 67.7
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 3.8e-84 315.5 258 67.4
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 3.8e-84 315.5 258 67.4
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 8.4e-84 314.3 232 69.8
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.1e-83 313.9 252 68.7
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 3.2e-83 312.4 256 67.2
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 4.2e-83 312.0 254 66.9
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 7.1e-83 311.2 254 65.7
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 9.3e-83 310.8 255 65.1
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 9.3e-83 310.8 252 68.3
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 1.6e-82 310.1 267 64.4
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 2.1e-82 309.7 256 65.6
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 2.7e-82 309.3 248 68.5
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 7.9e-82 307.8 258 64.0
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.3e-81 307.0 247 64.4
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.3e-81 307.0 247 64.4
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 2.3e-81 306.2 244 65.6
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 3.0e-81 305.8 245 67.8
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 3.9e-81 305.4 253 63.6
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 6.7e-81 304.7 247 65.6
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 4.3e-80 302.0 258 63.2
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 4.3e-80 302.0 258 63.2
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 4.3e-80 302.0 249 67.1
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 7.4e-80 301.2 250 63.2
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 1.6e-79 300.1 250 63.2
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 1.6e-79 300.1 250 63.2
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 2.2e-79 299.7 259 65.3
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 2.8e-79 299.3 246 63.8
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 2.8e-79 299.3 245 65.3
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 3.7e-79 298.9 243 66.3
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 4.8e-79 298.5 258 62.4
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 6.3e-79 298.1 249 64.3
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 8.2e-79 297.7 257 64.2
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 1.1e-78 297.4 198 75.3
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 1.1e-78 297.4 250 64.8
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 2.4e-78 296.2 190 75.3
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 2.4e-78 296.2 257 62.6
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 4.1e-78 295.4 243 65.0
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 9.0e-78 294.3 254 66.1
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.3e-76 290.4 245 64.9
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 3.8e-76 288.9 201 69.2
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 3.8e-76 288.9 191 77.0
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 8.5e-76 287.7 191 75.4
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.5e-75 286.2 201 68.7
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 4.6e-74 282.0 245 63.3
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 6.1e-74 281.6 203 70.9
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 7.9e-74 281.2 238 63.9
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 1.4e-73 280.4 247 63.2
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 3.0e-73 279.3 258 58.5
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 1.1e-72 277.3 249 61.8
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 2.5e-72 276.2 202 67.3
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.3e-71 273.9 245 58.8
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 2.2e-71 273.1 239 62.8
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.4e-70 270.4 257 58.4
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 7.7e-69 264.6 259 59.5
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 1.7e-68 263.5 229 63.3
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 3.8e-68 262.3 266 55.6
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 6.5e-68 261.5 187 68.4
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.6e-66 256.9 261 54.4
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.6e-66 256.9 232 59.1
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 2.1e-66 256.5 260 55.0
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.1e-66 256.5 238 58.4
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 2.1e-66 256.5 255 54.5
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.0e-65 254.2 266 54.1
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.0e-65 254.2 238 58.4
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.4e-65 253.8 266 54.1
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 6.7e-65 251.5 188 64.9
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 3.3e-64 249.2 232 62.1
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 5.7e-64 248.4 166 73.5
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 9.7e-64 247.7 188 63.3
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 1.7e-63 246.9 246 56.9
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 2.8e-63 246.1 248 56.9
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 8.2e-63 244.6 211 62.6
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.4e-62 243.8 258 55.4
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 1.8e-62 243.4 179 64.8
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 5.3e-62 241.9 246 53.3
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 5.3e-62 241.9 191 63.9
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 9.1e-62 241.1 191 64.9
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 3.8e-60 235.7 153 78.4
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 5.7e-56 221.9 175 65.1
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 6.3e-55 218.4 178 60.7
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.0e-52 211.1 141 74.5
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 3.2e-51 206.1 257 50.2
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 1.8e-49 200.3 179 59.8
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 5.0e-28 129.0 98 64.3
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 2.8e-26 123.2 129 52.7
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 1.7e-23 114.0 98 59.2
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 8.0e-18 95.1 153 41.2
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-17 92.4 103 40.8
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.3e-15 87.8 71 59.2
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-14 83.2 117 41.0
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 2.8e-10 70.1 55 65.5
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.5e-08 64.3 95 43.2
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 1.7e-07 60.8 114 39.5
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.9e-06 57.4 44 65.9


User provided reference genes

Program Settings