Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028066 Sechium edule HOM05D002965 ORTHO05D010183 0.0e+00 1258.4 630 100.0
Nitab4.5_0005831g0070 Nicotiana tabacum HOM05D002965 ORTHO05D010183 4.7e-75 286.6 350 54.9
LjContig00315g0010995 Lotus japonicus HOM05D002965 ORTHO05D010183 4.9e-72 276.6 184 78.8
Nitab4.5_0001761g0080 Nicotiana tabacum HOM05D002965 ORTHO05D010183 2.3e-69 267.7 361 51.2
arahy.Tifrunner.gnm1.ann1.CG3D8R Arachis hypogaea HOM05D002965 ORTHO05D010183 1.2e-67 261.9 198 72.7
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 1.6e-67 261.5 172 80.8
arahy.Tifrunner.gnm1.ann1.EP7E6M Arachis hypogaea HOM05D002965 ORTHO05D010183 8.1e-67 259.2 198 72.2
arahy.Tifrunner.gnm1.ann1.I1QAK6 Arachis hypogaea HOM05D002965 ORTHO05D010183 8.1e-67 259.2 198 71.7
CsaV3_UNG209220 Cucumis sativus L. HOM05D002965 ORTHO05D010183 2.7e-62 244.2 134 90.3
Medtr0082s0280 Medicago truncatula HOM05D002965 ORTHO05D010183 6.6e-61 239.6 121 96.7
unitig_87.g27935 Utricularia gibba HOM05D002965 ORTHO05D010183 6.6e-61 239.6 249 59.0
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.1e-60 238.8 167 76.6
Hma1.2p1_1338F.1_g276549 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 3.3e-60 237.3 121 95.9
Hma1.2p1_1338F.1_g276560 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 3.3e-60 237.3 121 95.9
CAN.G309.4 Capsicum annuum HOM05D002965 ORTHO05D010183 5.6e-60 236.5 121 95.9
SGA_v2.0_scaffold479G52282 Striga asiatica HOM05D002965 ORTHO05D010183 5.6e-60 236.5 274 53.3
QL05p039661 Quercus lobata HOM05D002965 ORTHO05D010183 9.5e-60 235.7 121 95.0
Cpa.g.sc263.23 Carica papaya HOM05D002965 ORTHO05D010183 1.6e-59 235.0 121 95.0
Dinv06704 Davidia involucrata HOM05D002965 ORTHO05D010183 2.8e-59 234.2 121 95.0
Ah.10g028480 Amaranthus hybridus HOM05D002965 ORTHO05D010183 8.9e-58 229.2 126 91.3
SalBow1G8555 Salvia bowleyana HOM05D002965 ORTHO05D010183 5.8e-57 226.5 121 92.6
Nitab4.5_0000172g1470 Nicotiana tabacum HOM05D002965 ORTHO05D010183 2.2e-56 224.6 327 48.3
Cfa022987 Carpinus fangiana HOM05D002965 ORTHO05D010183 6.4e-56 223.0 502 37.8
Nitab4.5_0005613g0040 Nicotiana tabacum HOM05D002965 ORTHO05D010183 4.1e-55 220.3 120 90.0
Actinidia10888 Actinidia chinensis HOM05D002965 ORTHO05D010183 6.0e-54 216.5 111 95.5
Sp3g25630 Schrenkiella parvula HOM05D002965 ORTHO05D010183 1.5e-49 201.8 121 85.1
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 6.4e-48 196.4 323 44.6
TPR.G40481 Trifolium pratense HOM05D002965 ORTHO05D010183 3.2e-47 194.1 100 96.0
SHI48910 Sapria himalayana HOM05D002965 ORTHO05D010183 1.7e-45 188.3 127 80.3
SabraMtG0001800 Salix brachista HOM05D001325 ORTHO05D001540 4.8e-43 180.3 283 45.2
Psat6g191080 Pisum sativum HOM05D002965 ORTHO05D010183 1.1e-39 169.1 137 65.7
Hma1.2p1_0204F.1_g086870 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 5.4e-39 166.8 96 86.5
CDE02G3239 Ceratophyllum demersum HOM05D002965 ORTHO05D010183 4.6e-38 163.7 165 60.0
Hma1.2p1_0000F.1_g000060 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 6.0e-38 163.3 90 87.8
RcHm_v2.0_MTg0499241 Rosa chinensis HOM05D002965 ORTHO05D010183 2.5e-36 157.9 81 96.3
Aa31csc822G20 Aethionema arabicum HOM05D002965 ORTHO05D011068 5.6e-36 156.8 132 63.6
Medtr5g040110 Medicago truncatula HOM05D002965 ORTHO05D010183 2.1e-35 154.8 81 95.1
Potri.007G061981 Populus trichocarpa HOM05D002965 ORTHO05D010183 2.1e-35 154.8 83 92.8
HanXRQChr08g0212281 Helianthus annuus HOM05D002965 ORTHO05D010183 1.8e-34 151.8 81 93.8
HanXRQMTg0579441 Helianthus annuus HOM05D002965 ORTHO05D010183 1.8e-34 151.8 81 93.8
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 2.4e-34 151.4 90 84.4
Lsat_1_v5_gn_4_66041 Lactuca sativa HOM05D002965 ORTHO05D010183 4.0e-34 150.6 84 90.5
MELO3C031425.2 Cucumis melo HOM05D002965 ORTHO05D010183 5.3e-34 150.2 113 69.0
Aqoxy1G02687 Aquilegia oxysepala HOM05D002965 ORTHO05D010183 3.4e-33 147.5 81 91.4
CAN.G1576.4 Capsicum annuum HOM05D002965 ORTHO05D010183 4.9e-32 143.7 90 82.2
Solyc00g118690.1 Solanum lycopersicum HOM05D002965 ORTHO05D010183 4.2e-31 140.6 114 71.9
Sopen05g007970 Solanum pennellii HOM05D002965 ORTHO05D010183 1.1e-28 132.5 65 96.9
ATMG01120 Arabidopsis thaliana HOM05D002965 ORTHO05D010183 9.6e-28 129.4 64 98.4
Peaxi162Scf00197g00037 Petunia axillaris HOM05D002965 ORTHO05D010183 8.1e-27 126.3 88 77.3
Nitab4.5_0002418g0070 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.1e-26 125.9 66 89.4
Solyc10g018950.1 Solanum lycopersicum HOM05D002965 ORTHO05D010183 9.0e-26 122.9 78 76.9
BNapus_Darmor_BZH_scaffold_234p00020 Brassica napus HOM05D002965 ORTHO05D010183 4.5e-25 120.6 100 68.0
BolSC28t60382H Brassica oleracea HOM05D002965 ORTHO05D010183 4.5e-25 120.6 100 68.0
BolSC28t60415H Brassica oleracea HOM05D002965 ORTHO05D010183 4.5e-25 120.6 100 68.0
BraSC177t45752Z Brassica rapa HOM05D002965 ORTHO05D010183 4.5e-25 120.6 100 68.0
SHI41349 Sapria himalayana HOM05D037518 ORTHO05D010183 4.5e-25 120.6 93 72.0
CAN.G390.19 Capsicum annuum HOM05D002965 ORTHO05D010183 5.8e-25 120.2 72 87.5
Hma1.2p1_0713F.1_g207720 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 1.0e-24 119.4 67 91.0
BraSC48t46251Z Brassica rapa HOM05D002965 ORTHO05D010183 2.9e-24 117.9 60 98.3
Lalb_Chr00c21g0405781 Lupinus albus HOM05D002965 ORTHO05D010183 2.5e-23 114.8 56 100.0
CDE02G2102 Ceratophyllum demersum HOM05D002965 ORTHO05D010183 5.5e-23 113.6 182 44.0
CAN.G1542.11 Capsicum annuum HOM05D002965 ORTHO05D011068 2.1e-22 111.7 90 67.8
Nitab4.5_0001796g0410 Nicotiana tabacum HOM05D002965 ORTHO05D010183 2.1e-22 111.7 56 96.4
Ah.04g159760 Amaranthus hybridus HOM05D003103 ORTHO05D011068 1.3e-21 109.0 69 81.2
VMungo0647G1384 Vigna mungo HOM05D002965 ORTHO05D010183 5.1e-21 107.1 56 92.9
CAN.G1061.19 Capsicum annuum HOM05D002965 ORTHO05D010183 1.1e-20 105.9 56 92.9
CAN.G285.11 Capsicum annuum HOM05D002965 ORTHO05D010183 1.1e-20 105.9 56 92.9
ECA039G0012 Erigeron canadensis HOM05D002965 ORTHO05D010183 1.1e-20 105.9 69 81.2
RhsimMtG0001000 Rhododendron simsii HOM05D000743 ORTHO05D000580 1.1e-20 105.9 56 92.9
CSS0026545 Camellia sinensis var. sinensis HOM05D002965 ORTHO05D010183 1.9e-20 105.1 96 62.5
SMO053G0011 Selaginella moellendorffii HOM05D002965 ORTHO05D010183 1.4e-18 99.0 68 67.6
Nitab4.5_0002558g0140 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.8e-18 98.6 56 87.5
Ca_28560_v3 Cicer arietinum L. HOM05D002965 ORTHO05D010536 4.1e-18 97.4 106 51.9
Cpa.g.sc263.24 Carica papaya HOM05D002965 ORTHO05D011068 1.2e-17 95.9 56 87.5
Nitab4.5_0001763g0110 Nicotiana tabacum HOM05D002965 ORTHO05D011068 1.3e-16 92.4 89 58.4
Nitab4.5_0005613g0030 Nicotiana tabacum HOM05D002965 ORTHO05D011068 1.9e-15 88.6 98 54.1
Nitab4.5_0002653g0030 Nicotiana tabacum HOM05D002965 ORTHO05D011068 2.5e-15 88.2 118 47.5
Mapoly0013s0013 Marchantia polymorpha HOM05D002965 ORTHO05D010183 3.2e-15 87.8 65 63.1
Eucgr.C02171 Eucalyptus grandis HOM05D002965 ORTHO05D011068 4.6e-14 84.0 56 78.6
CSS0045201 Camellia sinensis var. sinensis HOM05D002965 ORTHO05D011068 3.0e-13 81.3 44 93.2
PGSC0003DMG400017419 Solanum tuberosum HOM05D002965 ORTHO05D011068 5.1e-13 80.5 47 87.2
CsaV3_UNG209190 Cucumis sativus L. HOM05D016050 ORTHO05D011068 4.3e-12 77.4 43 88.4
Nitab4.5_0000215g0070 Nicotiana tabacum HOM05D002965 ORTHO05D011068 4.3e-12 77.4 70 60.0
Nitab4.5_0000859g0160 Nicotiana tabacum HOM05D002965 ORTHO05D010183 4.3e-12 77.4 68 60.3
SHI29064 Sapria himalayana HOM05D002965 ORTHO05D010183 2.2e-11 75.1 63 61.9
Nitab4.5_0000859g0140 Nicotiana tabacum HOM05D002965 ORTHO05D011068 3.1e-10 71.2 100 50.0
Nitab4.5_0002558g0110 Nicotiana tabacum HOM05D002965 ORTHO05D011068 4.1e-10 70.9 165 36.4
Dinv34203 Davidia involucrata HOM05D002965 ORTHO05D010183 6.9e-10 70.1 40 85.0
ATMG01130 Arabidopsis thaliana HOM05D002965 ORTHO05D011068 9.1e-10 69.7 56 73.2
Nitab4.5_0004376g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-09 68.9 37 94.6
BolC7t41501H Brassica oleracea HOM05D002965 ORTHO05D010183 2.0e-09 68.6 36 88.9
Nitab4.5_0000886g0150 Nicotiana tabacum HOM05D002965 ORTHO05D011068 1.7e-08 65.5 100 43.0
Haze_01424 Corylus avellana HOM05D022652 ORTHO05D011068 8.5e-08 63.2 33 97.0
Haze_01425 Corylus avellana HOM05D022652 ORTHO05D011068 8.5e-08 63.2 33 97.0
Ah.13g067000 Amaranthus hybridus HOM05D008690 ORTHO05D010874 4.2e-07 60.8 43 74.4
Nitab4.5_0000580g0190 Nicotiana tabacum HOM05D002965 ORTHO05D011068 4.2e-07 60.8 33 84.8
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 5.5e-07 60.5 38 78.9
SHI36045 Sapria himalayana HOM05D003666 ORTHO05D004770 5.5e-07 60.5 33 90.9


User provided reference genes

Program Settings