Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 4.1e-107 391.3 191 100.0
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 1.0e-65 253.8 172 74.4
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 6.7e-65 251.1 177 72.9
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 1.5e-61 240.0 171 73.7
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 3.4e-61 238.8 172 73.8
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 1.0e-52 210.7 139 69.8
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 3.8e-52 208.8 140 70.0
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 4.2e-51 205.3 167 60.5
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 5.5e-51 204.9 123 76.4
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 7.1e-51 204.5 155 65.2
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 2.1e-50 203.0 127 73.2
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 7.9e-50 201.1 170 57.6
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 2.3e-49 199.5 128 71.9
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 5.1e-49 198.4 152 64.5
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.1e-48 197.2 127 70.1
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 1.9e-48 196.4 130 70.0
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 3.3e-48 195.7 131 71.0
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 4.3e-48 195.3 175 57.7
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 4.3e-48 195.3 184 55.4
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 5.7e-48 194.9 125 72.8
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 7.4e-48 194.5 125 72.8
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 7.4e-48 194.5 125 72.8
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 9.6e-48 194.1 127 70.9
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 9.6e-48 194.1 127 68.5
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 1.3e-47 193.7 125 72.0
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.3e-47 193.7 131 69.5
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.3e-47 193.7 131 69.5
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 1.6e-47 193.4 129 70.5
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 2.1e-47 193.0 131 68.7
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 2.1e-47 193.0 180 56.1
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 2.8e-47 192.6 176 58.5
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 2.8e-47 192.6 130 69.2
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 3.7e-47 192.2 136 67.6
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 4.8e-47 191.8 148 62.2
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 6.3e-47 191.4 131 68.7
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 8.2e-47 191.0 126 69.8
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 1.4e-46 190.3 180 57.2
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 2.4e-46 189.5 123 70.7
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 4.1e-46 188.7 176 54.5
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 4.1e-46 188.7 115 73.9
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 6.9e-46 188.0 176 55.7
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 6.9e-46 188.0 127 70.1
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 6.9e-46 188.0 173 54.3
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 9.0e-46 187.6 126 66.7
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 1.2e-45 187.2 123 69.9
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 1.5e-45 186.8 119 73.9
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.5e-45 186.8 127 70.1
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 2.0e-45 186.4 128 68.8
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 2.0e-45 186.4 128 68.8
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 3.4e-45 185.7 133 66.2
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 3.4e-45 185.7 127 70.1
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 4.5e-45 185.3 130 66.9
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 5.9e-45 184.9 121 71.1
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 5.9e-45 184.9 122 71.3
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 5.9e-45 184.9 158 59.5
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 7.6e-45 184.5 131 66.4
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.3e-44 183.7 127 69.3
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 1.3e-44 183.7 170 57.1
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 1.7e-44 183.3 122 69.7
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 1.7e-44 183.3 124 70.2
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 2.9e-44 182.6 111 73.0
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 2.9e-44 182.6 127 68.5
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 3.8e-44 182.2 119 72.3
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 6.5e-44 181.4 150 60.0
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 8.5e-44 181.0 172 57.0
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 1.1e-43 180.6 132 66.7
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.9e-43 179.9 165 55.8
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 1.9e-43 179.9 135 60.7
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.9e-43 179.9 132 61.4
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 2.5e-43 179.5 159 56.6
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 3.2e-43 179.1 122 69.7
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 4.2e-43 178.7 115 71.3
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 5.5e-43 178.3 124 66.9
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 5.5e-43 178.3 138 62.3
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 9.3e-43 177.6 113 71.7
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.6e-42 176.8 137 62.0
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 2.7e-42 176.0 165 56.4
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 6.1e-42 174.9 172 54.1
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 6.1e-42 174.9 163 55.2
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 7.9e-42 174.5 123 65.9
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 1.3e-41 173.7 124 65.3
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 1.3e-41 173.7 124 65.3
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 1.3e-41 173.7 124 65.3
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 1.8e-41 173.3 122 65.6
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 2.3e-41 172.9 107 72.0
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 3.0e-41 172.6 133 58.6
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 1.1e-40 170.6 148 52.7
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 1.5e-40 170.2 115 68.7
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 1.9e-40 169.9 129 63.6
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 1.9e-40 169.9 124 63.7
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 1.9e-40 169.9 124 63.7
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 2.5e-40 169.5 124 64.5
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 7.4e-40 167.9 170 47.6
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 7.4e-40 167.9 126 64.3
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 3.1e-38 162.5 107 68.2
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 4.1e-38 162.2 126 54.8
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 5.3e-38 161.8 156 51.9
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 5.3e-38 161.8 138 57.2
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 6.9e-38 161.4 90 80.0
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 9.1e-38 161.0 107 67.3
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 2.0e-37 159.8 98 72.4
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 2.9e-36 156.0 127 59.8
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 3.2e-35 152.5 113 59.3
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 6.7e-33 144.8 92 76.1
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 9.7e-32 141.0 101 66.3
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 9.7e-32 141.0 101 66.3
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.3e-31 140.6 143 51.0
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.4e-30 137.1 91 71.4
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 2.4e-30 136.3 91 64.8
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 3.1e-30 136.0 107 56.1
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 2.6e-29 132.9 82 75.6
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 4.7e-26 122.1 86 64.0
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.0e-24 116.7 85 64.7
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 1.3e-23 114.0 84 59.5
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.8e-22 110.2 103 51.5
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 7.0e-22 108.2 111 45.9
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 4.5e-21 105.5 108 51.9
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 1.0e-20 104.4 158 42.4
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 1.3e-20 104.0 89 55.1
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 1.5e-19 100.5 91 47.3
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 9.1e-14 81.3 87 39.1
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 8.5e-12 74.7 41 80.5
Cre03.g208049 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D139805 3.7e-07 59.3 84 34.5
vmacro22872 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 4.8e-07 58.9 51 60.8


User provided reference genes

Program Settings