Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 5.4e-72 274.2 140 100.0
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 8.3e-57 223.8 139 84.9
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 3.5e-47 191.8 138 70.3
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 9.6e-45 183.7 138 65.9
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.8e-44 182.2 138 68.8
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.1e-43 180.3 140 69.3
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 1.5e-42 176.4 131 67.9
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.5e-42 176.4 136 65.4
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.8e-42 174.5 140 66.4
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 9.9e-42 173.7 140 67.9
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.3e-41 173.3 140 67.1
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.2e-41 172.6 140 66.4
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.2e-41 172.6 140 66.4
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 2.2e-41 172.6 138 65.2
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 6.4e-41 171.0 138 66.7
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.4e-41 170.6 140 65.7
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 1.1e-40 170.2 138 64.5
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.4e-40 167.9 140 63.6
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.4e-40 167.9 140 63.6
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.4e-40 167.9 140 63.6
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 5.4e-40 167.9 151 61.6
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 2.1e-39 166.0 145 62.1
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.7e-39 165.6 138 55.8
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 4.6e-39 164.9 139 61.9
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 7.8e-39 164.1 139 61.9
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 1.0e-38 163.7 138 63.8
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.1e-38 161.4 138 63.8
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 8.7e-38 160.6 139 61.2
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.1e-37 160.2 138 61.6
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.5e-37 159.8 138 63.0
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.5e-37 159.8 138 63.0
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.9e-37 159.5 143 60.8
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.9e-37 159.5 143 60.8
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.3e-37 158.7 140 65.7
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 3.3e-37 158.7 127 66.1
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 7.3e-37 157.5 140 58.6
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 7.3e-37 157.5 138 60.9
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 7.3e-37 157.5 138 58.0
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 1.6e-36 156.4 131 60.3
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.1e-36 156.0 138 59.4
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.4e-35 153.3 139 58.3
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 2.4e-35 152.5 127 66.1
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 3.1e-35 152.1 126 60.3
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 5.3e-35 151.4 126 64.3
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 5.3e-35 151.4 131 59.5
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 1.5e-34 149.8 129 63.6
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 2.0e-34 149.4 125 64.0
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 3.4e-34 148.7 131 63.4
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 3.4e-34 148.7 138 60.9
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.5e-34 148.3 126 61.9
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 7.6e-34 147.5 126 62.7
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 1.3e-33 146.7 129 57.4
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.7e-33 146.4 126 59.5
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 2.2e-33 146.0 137 56.2
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 2.9e-33 145.6 111 70.3
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.4e-32 143.3 126 63.5
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.4e-32 143.3 135 57.8
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.9e-32 142.9 126 57.9
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.9e-32 142.9 130 55.4
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 4.2e-32 141.7 128 62.5
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 1.6e-31 139.8 138 55.1
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 2.7e-31 139.0 129 56.6
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 3.5e-31 138.7 138 55.8
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.5e-31 138.7 129 55.8
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 3.5e-31 138.7 129 55.0
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 3.5e-31 138.7 126 58.7
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.9e-31 137.5 129 55.8
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.3e-30 136.7 138 52.2
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 2.3e-30 136.0 141 55.3
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 3.9e-30 135.2 138 57.2
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 2.5e-29 132.5 138 55.8
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 5.6e-29 131.3 137 49.6
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 7.4e-29 131.0 138 53.6
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.3e-28 130.2 140 53.6
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 1.3e-28 130.2 146 51.4
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 1.6e-28 129.8 132 55.3
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 3.6e-28 128.6 140 49.3
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 4.8e-28 128.3 137 56.9
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 6.2e-28 127.9 127 54.3
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 6.2e-28 127.9 131 58.8
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 8.1e-28 127.5 137 55.5
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.4e-27 125.9 139 53.2
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 2.4e-27 125.9 138 48.6
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.1e-27 125.6 144 50.7
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 6.9e-27 124.4 137 53.3
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 9.0e-27 124.0 136 54.4
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.5e-26 123.2 138 53.6
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 2.0e-26 122.9 122 52.5
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 2.6e-26 122.5 138 55.8
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 3.4e-26 122.1 135 55.6
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 4.5e-26 121.7 139 54.7
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.7e-25 119.8 138 54.3
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 2.2e-25 119.4 136 54.4
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 2.9e-25 119.0 137 54.0
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 3.8e-25 118.6 136 55.1
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 4.9e-25 118.2 138 47.8
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 5.5e-24 114.8 141 46.1
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 7.1e-24 114.4 131 49.6
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 1.6e-23 113.2 141 45.4
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 4.6e-23 111.7 110 54.5
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 1.0e-22 110.5 117 50.4
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.3e-22 110.2 134 53.7
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.5e-21 105.9 126 47.6
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 1.6e-20 103.2 145 41.4
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 2.8e-20 102.4 138 45.7
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 3.7e-20 102.1 143 46.2
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.8e-20 101.7 132 46.2
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.8e-19 99.8 122 48.4
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 2.4e-19 99.4 95 51.6
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 3.1e-19 99.0 138 44.9
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.2e-18 97.1 158 41.1
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 2.6e-18 95.9 96 56.2
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 7.6e-18 94.4 122 45.9
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 1.9e-16 89.7 111 50.5
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.9e-16 89.7 94 43.6
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 3.2e-16 89.0 126 45.2
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 5.5e-16 88.2 126 40.5
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 5.5e-16 88.2 138 37.7
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 1.6e-15 86.7 138 38.4
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.6e-15 86.7 95 42.1
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.6e-15 86.7 124 47.6
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 6.0e-15 84.7 95 40.0
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 1.0e-14 84.0 138 37.0
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.3e-14 83.6 149 34.9
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 1.3e-14 83.6 126 41.3
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.3e-14 82.8 140 42.9
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 2.3e-14 82.8 142 40.8
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 3.0e-14 82.4 133 41.4
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 3.0e-14 82.4 138 39.9
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 1.5e-13 80.1 106 45.3
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 3.3e-13 79.0 123 38.2
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 5.7e-13 78.2 125 44.8
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 5.7e-13 78.2 126 42.9
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 7.4e-13 77.8 150 39.3
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 9.6e-13 77.4 150 39.3
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.3e-12 77.0 134 41.8
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 3.7e-12 75.5 126 42.1
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 6.3e-12 74.7 126 38.1
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 5.3e-11 71.6 107 37.4
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 5.9e-10 68.2 135 36.3
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 7.6e-10 67.8 142 32.4
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.6e-10 67.8 119 41.2
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 2.2e-09 66.2 124 38.7
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 2.9e-09 65.9 147 31.3
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.4e-08 63.5 130 34.6
C01p29000 Brassica napus HOM05D003589 ORTHO05D005170 1.9e-08 63.2 118 38.1
BolC1t02831H Brassica oleracea HOM05D003589 ORTHO05D005170 1.9e-08 63.2 118 38.1
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.9e-08 63.2 130 34.6
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 1.9e-08 63.2 140 31.4
Pp3c1_25250 Physcomitrium patens HOM05D029953 ORTHO05D005170 2.5e-08 62.8 148 28.4
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 3.2e-08 62.4 110 37.3
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 3.2e-08 62.4 131 33.6
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-07 60.5 130 35.4
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 2.1e-07 59.7 128 29.7
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 3.6e-07 58.9 139 30.9
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 3.6e-07 58.9 146 34.9
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 1.3e-06 57.0 141 37.6
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 1.3e-06 57.0 140 27.9


User provided reference genes

Program Settings