Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028026 Sechium edule HOM05D001935 ORTHO05D010109 7.3e-81 303.9 161 100.0
MELO3C015930.2 Cucumis melo HOM05D001935 ORTHO05D010109 1.1e-63 246.9 166 75.3
ClCG09G005160 Citrullus lanatus HOM05D001935 ORTHO05D010109 2.6e-62 242.3 166 80.7
Sed0011579 Sechium edule HOM05D001935 ORTHO05D010109 6.0e-59 231.1 162 72.8
CsaV3_7G029910 Cucumis sativus L. HOM05D001935 ORTHO05D010109 1.4e-31 140.2 85 80.0
CiPaw.07G116400 Carya illinoinensis HOM05D001935 ORTHO05D010109 1.1e-28 130.6 163 46.6
Cpa.g.sc18.27 Carica papaya HOM05D001935 ORTHO05D010109 1.4e-28 130.2 160 46.2
QL12p020164 Quercus lobata HOM05D001935 ORTHO05D010109 7.2e-28 127.9 163 46.0
Cfa005813 Carpinus fangiana HOM05D001935 ORTHO05D010109 3.6e-27 125.6 159 47.2
Haze_05029 Corylus avellana HOM05D001935 ORTHO05D010109 3.6e-27 125.6 158 46.8
CiPaw.08G090700 Carya illinoinensis HOM05D001935 ORTHO05D010109 1.9e-25 119.8 161 45.3
Gohir.D12G129300 Gossypium hirsutum HOM05D001935 ORTHO05D010109 9.7e-25 117.5 146 43.8
Gorai.008G140400 Gossypium raimondii HOM05D001935 ORTHO05D010109 2.2e-24 116.3 146 43.8
Sabra16G0129700 Salix brachista HOM05D001935 ORTHO05D010109 3.7e-24 115.5 155 43.9
Gohir.A12G125800 Gossypium hirsutum HOM05D001935 ORTHO05D010109 8.2e-24 114.4 146 42.5
Thecc.01G311900 Theobroma cacao HOM05D001935 ORTHO05D010109 3.1e-23 112.5 165 40.6
Potri.016G128800 Populus trichocarpa HOM05D001935 ORTHO05D010109 4.1e-23 112.1 159 43.4
Duzib138G0891 Durio zibethinus HOM05D001935 ORTHO05D010109 5.3e-23 111.7 160 41.2
Gohir.D07G132400 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.5e-22 110.2 153 41.2
Gorai.001G143800 Gossypium raimondii HOM05D001935 ORTHO05D010109 1.5e-22 110.2 153 41.2
Manes.01G226900 Manihot esculenta HOM05D001935 ORTHO05D010109 3.4e-22 109.0 161 41.0
TAR633G2657 Trochodendron aralioides HOM05D001935 ORTHO05D010109 4.5e-22 108.6 156 41.7
COL.COLO4_23245 Corchorus olitorius HOM05D001935 ORTHO05D010109 5.9e-22 108.2 161 41.6
Gohir.A11G109500 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.0e-21 107.5 135 45.9
TWI36G1013 Tripterygium wilfordii HOM05D001935 ORTHO05D010109 1.0e-21 107.5 158 38.6
Gohir.A07G128000 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.3e-21 107.1 153 40.5
Gorai.007G123300 Gossypium raimondii HOM05D001935 ORTHO05D010109 2.9e-21 105.9 135 45.9
Gohir.D11G115100 Gossypium hirsutum HOM05D001935 ORTHO05D010109 5.0e-21 105.1 135 44.4
Potri.006G105600 Populus trichocarpa HOM05D001935 ORTHO05D010109 5.0e-21 105.1 168 41.1
Aqoxy2G01830 Aquilegia oxysepala HOM05D001935 ORTHO05D010109 6.5e-21 104.8 158 41.1
TAR362G0690 Trochodendron aralioides HOM05D001136 ORTHO05D010109 6.5e-21 104.8 141 44.0
Potri.006G105500 Populus trichocarpa HOM05D001935 ORTHO05D010109 8.5e-21 104.4 168 41.1
Dinv10085 Davidia involucrata HOM05D001935 ORTHO05D010109 1.1e-20 104.0 138 45.7
Dinv10084 Davidia involucrata HOM05D001935 ORTHO05D010109 1.9e-20 103.2 113 48.7
CSS0036092 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 1.6e-19 100.1 160 35.6
Atru.chr5.1021 Acer truncatum HOM05D001935 ORTHO05D010109 2.7e-19 99.4 166 37.3
CSS0010042 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 2.7e-19 99.4 165 37.6
CSS0012652 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 2.7e-19 99.4 165 37.6
Atru.chr5.1024 Acer truncatum HOM05D001935 ORTHO05D010109 6.1e-19 98.2 166 37.3
Ciclev10022487m.g Citrus clementina HOM05D001935 ORTHO05D010109 1.4e-18 97.1 115 46.1
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.4e-18 97.1 110 45.5
PGR044G2318 Punica granatum HOM05D001935 ORTHO05D010109 1.4e-18 97.1 161 41.6
Phvul.001G212300 Phaseolus vulgaris HOM05D001935 ORTHO05D010109 2.3e-18 96.3 143 39.2
SalBow3G1122 Salvia bowleyana HOM05D001935 ORTHO05D010109 8.8e-18 94.4 154 35.7
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.5e-17 93.6 112 42.9
Eucgr.H01053 Eucalyptus grandis HOM05D001935 ORTHO05D010109 2.6e-17 92.8 166 39.2
Glyma.03G218900 Glycine max HOM05D001935 ORTHO05D010109 2.6e-17 92.8 145 40.7
Hma1.2p1_0486F.1_g163095 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 4.4e-17 92.0 163 38.0
Hma1.2p1_0486F.1_g163120 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 4.4e-17 92.0 163 38.0
Ca_09205_v3 Cicer arietinum L. HOM05D001935 ORTHO05D010109 5.7e-17 91.7 158 36.7
Actinidia21004 Actinidia chinensis HOM05D001136 ORTHO05D001144 7.4e-17 91.3 143 37.1
Medtr7g109420 Medicago truncatula HOM05D001935 ORTHO05D010109 7.4e-17 91.3 137 37.2
Sabra06G0082000 Salix brachista HOM05D001935 ORTHO05D010109 1.3e-16 90.5 154 37.7
GSVIVG01028106001 Vitis vinifera HOM05D001935 ORTHO05D010109 2.8e-16 89.4 152 38.8
Psat3g020520 Pisum sativum HOM05D001935 ORTHO05D010109 4.8e-16 88.6 137 38.0
TPR.G4060 Trifolium pratense HOM05D001935 ORTHO05D010109 6.3e-16 88.2 146 37.0
VMungo1383G2590 Vigna mungo HOM05D001935 ORTHO05D010109 8.2e-16 87.8 143 37.8
Glyma.19G215700 Glycine max HOM05D001935 ORTHO05D010109 1.8e-15 86.7 141 38.3
Oeu038015.2 Olea europaea HOM05D001935 ORTHO05D010109 1.8e-15 86.7 152 40.1
Lj1g0023097 Lotus japonicus HOM05D001935 ORTHO05D010109 2.4e-15 86.3 99 46.5
SGA_v2.0_scaffold376G50276 Striga asiatica HOM05D001935 ORTHO05D010109 6.9e-15 84.7 151 33.8
Rhsim13G0005300 Rhododendron simsii HOM05D001935 ORTHO05D010109 1.5e-14 83.6 148 36.5
Ah.11g049310 Amaranthus hybridus HOM05D001935 ORTHO05D010109 2.0e-14 83.2 171 35.7
EL10As5g23516 Beta vulgaris HOM05D001935 ORTHO05D010109 2.0e-14 83.2 152 37.5
Rhsim13G0005200 Rhododendron simsii HOM05D001935 ORTHO05D010109 3.4e-14 82.4 148 34.5
AUR62011822 Chenopodium quinoa HOM05D001935 ORTHO05D010109 7.7e-14 81.3 99 45.5
EL10As5g23517 Beta vulgaris HOM05D001935 ORTHO05D010109 2.2e-13 79.7 166 33.7
AUR62024666 Chenopodium quinoa HOM05D001935 ORTHO05D010109 2.9e-13 79.3 155 36.8
Ah.02g112210 Amaranthus hybridus HOM05D001935 ORTHO05D010109 5.0e-13 78.6 165 37.0
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 6.5e-13 78.2 102 42.2
ATR0706G209 Amborella trichopoda HOM05D001935 ORTHO05D010109 3.2e-12 75.9 147 34.0
Dinv12075 Davidia involucrata HOM05D001935 ORTHO05D010109 5.5e-12 75.1 74 50.0
unitig_0.g277 Utricularia gibba HOM05D001935 ORTHO05D010109 1.6e-11 73.6 150 32.0
DCAR_005768 Daucus carota HOM05D001935 ORTHO05D010109 1.4e-10 70.5 113 38.1
AUR62024667 Chenopodium quinoa HOM05D001935 ORTHO05D010109 1.1e-09 67.4 148 33.1
Sed0010378 Sechium edule HOM05D001935 ORTHO05D001700 1.5e-09 67.0 121 33.9
MSTRG.2193 Avicennia marina HOM05D001935 ORTHO05D001700 7.4e-09 64.7 108 36.1
FAN07G1185 Fragaria x ananassa HOM05D001935 ORTHO05D001700 7.4e-09 64.7 107 38.3
Sed0026428 Sechium edule HOM05D001935 ORTHO05D001700 7.4e-09 64.7 82 40.2
Lsat_1_v5_gn_2_80780 Lactuca sativa HOM05D001935 ORTHO05D001700 1.3e-08 63.9 112 34.8
Solyc04g007580.1 Solanum lycopersicum HOM05D001935 ORTHO05D001700 1.3e-08 63.9 106 35.8
Sopen04g002660 Solanum pennellii HOM05D001935 ORTHO05D001700 1.3e-08 63.9 106 35.8
Zm00001eb156470 Zea mays HOM05D001935 ORTHO05D001700 1.3e-08 63.9 120 33.3
Zm00001eb440490 Zea mays HOM05D001935 ORTHO05D001700 1.3e-08 63.9 120 33.3
FAN12G2861 Fragaria x ananassa HOM05D001935 ORTHO05D001700 2.2e-08 63.2 102 36.3
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 2.2e-08 63.2 105 34.3
Sabra08G0096000 Salix brachista HOM05D001935 ORTHO05D001700 2.2e-08 63.2 130 33.1
Atru.chr1.1571 Acer truncatum HOM05D001935 ORTHO05D001700 2.8e-08 62.8 97 37.1
FvH4_4g26170 Fragaria vesca HOM05D001935 ORTHO05D001700 2.8e-08 62.8 107 37.4
FAN12G0731 Fragaria x ananassa HOM05D001935 ORTHO05D001700 2.8e-08 62.8 107 37.4
FAN22G2316 Fragaria x ananassa HOM05D001935 ORTHO05D001700 2.8e-08 62.8 107 37.4
HanXRQChr17g0567051 Helianthus annuus HOM05D001935 ORTHO05D001700 2.8e-08 62.8 115 33.9
MSTRG.9308 Avicennia marina HOM05D007478 ORTHO05D001700 3.7e-08 62.4 164 28.7
ClCG01G006190 Citrullus lanatus HOM05D001935 ORTHO05D001700 3.7e-08 62.4 85 38.8
MELO3C005308.2 Cucumis melo HOM05D001935 ORTHO05D001700 3.7e-08 62.4 85 38.8
CsaV3_5G028470 Cucumis sativus L. HOM05D001935 ORTHO05D001700 3.7e-08 62.4 85 38.8
Potri.010G116000 Populus trichocarpa HOM05D001935 ORTHO05D001700 3.7e-08 62.4 92 38.0
Sabra10G0085800 Salix brachista HOM05D001935 ORTHO05D001700 3.7e-08 62.4 92 39.1
Sabra10G0087500 Salix brachista HOM05D001935 ORTHO05D001700 3.7e-08 62.4 92 39.1
MSTRG.4582 Avicennia marina HOM05D007478 ORTHO05D001700 4.8e-08 62.0 152 32.2
Ciclev10016694m.g Citrus clementina HOM05D001935 ORTHO05D001700 4.8e-08 62.0 104 35.6
Prupe.1G321600 Prunus persica HOM05D001935 ORTHO05D001700 4.8e-08 62.0 101 35.6
RcHm_v2.0_Chr4g0433741 Rosa chinensis HOM05D001935 ORTHO05D001700 4.8e-08 62.0 107 37.4
PGSC0003DMG400005992 Solanum tuberosum HOM05D001935 ORTHO05D001700 4.8e-08 62.0 106 34.9
Thecc.02G277900 Theobroma cacao HOM05D001935 ORTHO05D001700 4.8e-08 62.0 147 32.0
Nitab4.5_0001648g0030 Nicotiana tabacum HOM05D001935 ORTHO05D001700 6.3e-08 61.6 112 35.7
CiPaw.05G246800 Carya illinoinensis HOM05D001935 ORTHO05D001700 1.1e-07 60.8 166 30.1
Dinv16185 Davidia involucrata HOM05D001935 ORTHO05D001700 1.1e-07 60.8 101 36.6
Eucgr.F02810 Eucalyptus grandis HOM05D001935 ORTHO05D001700 1.1e-07 60.8 97 34.0
HanXRQChr07g0193751 Helianthus annuus HOM05D001935 ORTHO05D001700 1.4e-07 60.5 107 36.4
Nitab4.5_0000414g0010 Nicotiana tabacum HOM05D001935 ORTHO05D001700 1.8e-07 60.1 106 34.9
Peaxi162Scf00119g00143 Petunia axillaris HOM05D001935 ORTHO05D001700 1.8e-07 60.1 168 29.2
SGA_v2.0_scaffold14G06923 Striga asiatica HOM05D001935 ORTHO05D001700 1.8e-07 60.1 104 32.7
CSS0049402 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D001700 2.4e-07 59.7 96 35.4
FAN17G0536 Fragaria x ananassa HOM05D001935 ORTHO05D001700 2.4e-07 59.7 107 37.4
HanXRQChr14g0440411 Helianthus annuus HOM05D001935 ORTHO05D001700 3.1e-07 59.3 112 34.8
Potri.008G127200 Populus trichocarpa HOM05D001935 ORTHO05D001700 3.1e-07 59.3 107 33.6
SalBow3G1818 Salvia bowleyana HOM05D001935 ORTHO05D001700 3.1e-07 59.3 105 35.2
SalBow3G2705 Salvia bowleyana HOM05D001935 ORTHO05D001700 3.1e-07 59.3 105 35.2
Gohir.D05G318900 Gossypium hirsutum HOM05D001935 ORTHO05D001700 4.1e-07 58.9 105 34.3
Gorai.009G341800 Gossypium raimondii HOM05D001935 ORTHO05D001700 4.1e-07 58.9 105 34.3
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 4.1e-07 58.9 105 33.3
SEGI_32719 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 4.1e-07 58.9 116 35.3
Atru.chr11.360 Acer truncatum HOM05D001935 ORTHO05D001700 5.3e-07 58.5 95 37.9
Zm00001eb340260 Zea mays HOM05D001935 ORTHO05D010109 5.3e-07 58.5 122 29.5
EL10As7g23792 Beta vulgaris HOM05D007478 ORTHO05D001700 7.0e-07 58.2 160 30.0
Oeu004315.1 Olea europaea HOM05D001935 ORTHO05D001700 9.1e-07 57.8 107 33.6
Zm00001eb439660 Zea mays HOM05D001935 ORTHO05D001700 9.1e-07 57.8 87 37.9
Ah.02g112200 Amaranthus hybridus HOM05D007400 ORTHO05D009351 1.2e-06 57.4 80 40.0
ECA248G0856 Erigeron canadensis HOM05D001935 ORTHO05D001700 1.2e-06 57.4 95 35.8
Lj6P749T50 Lonicera japonica HOM05D001935 ORTHO05D001700 1.2e-06 57.4 106 34.0
TPR.G25253 Trifolium pratense HOM05D001935 ORTHO05D001700 1.2e-06 57.4 90 35.6
Actinidia36351 Actinidia chinensis HOM05D001935 ORTHO05D001700 1.6e-06 57.0 105 34.3
MD13G1028700 Malus domestica HOM05D001935 ORTHO05D001700 1.6e-06 57.0 95 34.7
SGA_v2.0_scaffold172G39020 Striga asiatica HOM05D007478 ORTHO05D001700 1.6e-06 57.0 145 32.4
SGA_v2.0_scaffold202G41490 Striga asiatica HOM05D001935 ORTHO05D001700 1.6e-06 57.0 119 31.1
CiPaw.06G014100 Carya illinoinensis HOM05D001935 ORTHO05D001700 2.0e-06 56.6 101 33.7
Os01g0686000 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D001700 2.0e-06 56.6 68 39.7
PGR004G0989 Punica granatum HOM05D001935 ORTHO05D001700 2.0e-06 56.6 110 33.6
Duzib251G0665 Durio zibethinus HOM05D001935 ORTHO05D001700 2.6e-06 56.2 101 34.7
Glyma.05G001500 Glycine max HOM05D001935 ORTHO05D001700 3.5e-06 55.8 89 38.2
Gohir.A05G317100 Gossypium hirsutum HOM05D001935 ORTHO05D001700 3.5e-06 55.8 105 33.3
Rhsim09G0068600 Rhododendron simsii HOM05D001935 ORTHO05D001700 3.5e-06 55.8 98 33.7
A05p43910 Brassica napus HOM05D001935 ORTHO05D001700 4.5e-06 55.5 106 32.1
COL.COLO4_03618 Corchorus olitorius HOM05D001935 ORTHO05D001700 4.5e-06 55.5 100 33.0
Migut.E00401 Erythranthe guttata HOM05D001935 ORTHO05D001700 4.5e-06 55.5 95 32.6
Migut.H00255 Erythranthe guttata HOM05D001935 ORTHO05D001700 4.5e-06 55.5 88 35.2
SEGI_39105 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 4.5e-06 55.5 114 33.3
MSTRG.3539 Avicennia marina HOM05D001935 ORTHO05D001700 5.9e-06 55.1 88 37.5
EL10Ac5g10513 Beta vulgaris HOM05D001935 ORTHO05D010109 5.9e-06 55.1 87 35.6
BraA05t23128Z Brassica rapa HOM05D001935 ORTHO05D001700 5.9e-06 55.1 106 32.1
CANSAT01G1845 Cannabis sativa HOM05D001935 ORTHO05D001700 5.9e-06 55.1 89 39.3
Cc11_g09100 Coffea canephora HOM05D001935 ORTHO05D001700 5.9e-06 55.1 103 33.0
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 5.9e-06 55.1 108 34.3
AUR62023260 Chenopodium quinoa HOM05D001935 ORTHO05D001700 7.7e-06 54.7 114 31.6
Os05g0552800 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D001700 7.7e-06 54.7 88 30.7
Psat1g052120 Pisum sativum HOM05D001935 ORTHO05D001700 7.7e-06 54.7 90 34.4
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 7.7e-06 54.7 96 31.2


User provided reference genes

Program Settings