Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 3936.3 1978 100.0
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 3439.0 2006 87.3
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 3417.1 1986 87.3
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 3410.5 1983 87.3
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2506.1 1993 65.6
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2489.1 1999 65.0
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2464.1 2013 64.7
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2408.6 1891 66.5
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2392.8 1983 63.8
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2369.7 1957 63.6
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2367.8 1999 63.3
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2361.6 2009 62.9
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2361.6 2002 62.3
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2358.9 2020 62.0
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2356.3 1994 62.8
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2350.9 2005 62.6
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2346.6 1981 62.9
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2325.1 2075 59.9
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2324.7 2002 62.2
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2316.6 2000 61.9
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2312.7 1991 61.6
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2310.0 1993 61.4
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2308.5 2005 61.3
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2298.9 1974 60.9
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2290.8 2003 61.3
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2279.6 1981 61.1
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2278.8 2002 60.7
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2270.4 1991 60.4
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2262.3 1987 60.4
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2259.6 1995 61.0
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2249.2 1896 62.3
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2248.0 2006 60.1
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2238.0 1982 60.3
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2232.6 1879 62.6
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2224.5 2071 57.6
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2202.2 1985 59.4
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2201.4 2136 57.0
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2198.3 2006 58.9
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2197.2 1900 61.8
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2191.8 1972 60.0
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2152.1 1954 59.1
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2137.5 1976 59.0
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2130.9 1987 57.9
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2107.0 1956 57.4
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2093.5 1976 56.6
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2093.2 2049 55.5
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2081.2 1957 57.1
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2071.6 1992 55.6
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2067.4 1869 59.7
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2065.0 2049 55.3
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2057.3 1981 56.1
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2056.6 2062 55.0
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2055.0 2002 55.8
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2047.3 2052 54.6
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2043.9 1990 57.0
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2013.0 1944 56.7
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1999.6 1950 55.8
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1999.2 1903 57.0
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1995.7 1900 56.7
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1991.1 1902 56.7
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1988.8 1965 54.4
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1988.4 1948 55.6
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1983.4 1903 56.6
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1982.6 1869 57.7
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1978.8 1965 55.0
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1971.4 1904 56.4
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1969.1 1895 56.6
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1968.7 1903 56.0
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1963.3 1992 54.3
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1956.4 1933 55.8
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1955.3 1937 54.5
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1954.9 1932 55.3
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1951.8 2121 51.2
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1951.4 1929 55.1
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1950.6 1988 54.3
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1949.1 2031 53.9
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1927.5 1963 54.5
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1919.4 1905 55.5
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1919.1 1914 55.4
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1916.7 1930 54.6
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1792.7 2146 49.0
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1767.7 1920 52.6
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1639.8 1544 57.4
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1616.7 1616 55.4
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1528.5 1766 49.0
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1526.1 1340 62.1
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1435.6 1949 44.3
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1342.8 1093 63.2
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1239.2 2170 38.0
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1174.8 2201 36.4
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1152.9 1957 38.7
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1078.5 2103 35.5
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 3.7e-283 979.5 793 64.2
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 3.6e-238 830.1 669 63.4
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 3.7e-235 820.1 1387 39.3
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 2.0e-233 814.3 775 57.5
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 3.4e-228 797.0 1147 42.7
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 7.0e-226 789.3 799 55.2
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.2e-225 788.5 2084 30.4
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 5.6e-199 699.9 728 54.0
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 1.6e-182 645.2 709 51.5
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 1.4e-170 605.5 800 47.2
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 6.8e-128 463.8 438 54.3
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 9.5e-122 443.4 358 61.2
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 9.9e-87 327.0 196 81.1
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 2.2e-78 299.3 502 41.0
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 7.9e-68 264.2 222 60.8
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 6.7e-67 261.2 217 59.4
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 2.0e-63 249.6 355 40.0
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 8.7e-59 234.2 269 45.7
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 8.2e-57 227.6 307 47.2
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 7.6e-55 221.1 124 86.3
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 8.2e-41 174.5 270 41.5
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 3.2e-37 162.5 198 49.0
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.1e-29 137.5 114 60.5
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 3.2e-29 136.0 80 83.8
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.2e-29 134.8 153 47.7
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 5.5e-21 108.6 494 25.7
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 6.1e-20 105.1 82 64.6
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 1.0e-19 104.4 153 40.5
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 3.7e-17 95.9 68 66.2
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 1.0e-14 87.8 61 67.2
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 1.5e-13 84.0 74 59.5
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 4.7e-12 79.0 81 51.9
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 6.1e-12 78.6 71 50.7
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 6.8e-11 75.1 95 44.2
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 1.2e-10 74.3 124 41.1
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 4.5e-07 62.4 317 27.4
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 1.7e-06 60.5 69 52.2
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 3.8e-06 59.3 87 44.8


User provided reference genes

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