Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 0.0e+00 1840.1 907 100.0
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 0.0e+00 1457.6 910 79.6
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 0.0e+00 1454.9 910 78.7
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 1.2e-270 936.8 923 52.9
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 6.2e-270 934.5 919 54.4
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 5.8e-268 927.9 917 52.1
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 1.4e-266 923.3 934 53.1
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.7e-264 916.4 919 53.3
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.0e-261 905.2 923 53.8
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 7.6e-260 901.0 915 51.1
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 4.9e-259 898.3 915 51.0
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 3.2e-258 895.6 917 50.8
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.0e-256 890.6 915 51.3
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.0e-256 889.0 915 51.1
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 4.8e-254 881.7 920 50.1
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 2.7e-249 865.9 915 50.3
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.8e-248 863.2 919 51.9
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-245 854.0 911 50.2
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 3.9e-240 835.5 917 49.5
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 6.7e-240 834.7 909 49.5
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.8e-237 826.6 908 48.9
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 2.4e-237 826.2 898 50.2
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 4.1e-237 825.5 914 49.3
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.7e-235 820.1 911 48.5
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 1.4e-234 817.0 911 49.0
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 1.8e-232 810.1 916 46.0
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.3e-230 803.9 917 45.9
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 3.8e-227 792.3 914 47.2
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 5.1e-224 781.9 910 46.9
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 1.7e-222 776.9 904 46.7
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 2.4e-221 773.1 907 46.4
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.0e-219 767.7 918 46.7
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 1.1e-218 764.2 932 46.9
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 1.4e-216 757.3 909 46.2
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 2.3e-216 756.5 903 47.4
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 2.6e-215 753.1 909 46.9
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 4.5e-212 742.3 914 46.3
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.8e-205 720.3 720 50.7
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 2.2e-203 713.4 826 46.6
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 5.0e-203 712.2 914 45.5
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 1.1e-202 711.1 942 44.4
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 7.2e-202 708.4 931 44.5
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 1.2e-201 707.6 906 44.3
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 7.7e-196 688.3 913 43.5
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 5.5e-194 682.2 768 47.3
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 9.5e-194 681.4 914 42.9
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 8.0e-193 678.3 891 44.9
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 4.5e-188 662.5 779 45.6
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.9e-186 657.1 817 43.8
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 1.9e-186 657.1 915 41.6
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 6.1e-185 652.1 738 49.1
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 1.2e-183 647.9 879 41.8
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 9.8e-183 644.8 923 40.7
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 4.9e-182 642.5 887 43.1
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.1e-181 641.3 947 40.5
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 6.8e-176 622.1 905 39.9
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 7.5e-175 618.6 920 39.3
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 1.3e-174 617.8 896 40.6
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 1.5e-170 604.4 873 41.0
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.9e-170 604.0 889 41.5
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 9.5e-170 601.7 920 39.7
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 1.1e-168 598.2 912 38.9
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 3.1e-168 596.7 906 40.0
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 4.4e-167 592.8 936 39.1
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 5.4e-165 585.9 920 38.0
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.1e-164 583.9 931 38.7
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 3.9e-163 579.7 927 37.6
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 5.6e-162 575.9 931 39.1
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 2.1e-161 573.9 894 38.9
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 8.1e-161 572.0 916 39.2
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 3.8e-158 563.1 920 38.5
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 6.4e-158 562.4 894 38.7
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 4.6e-156 556.2 895 39.7
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 4.3e-154 549.7 916 37.3
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.3e-154 549.7 942 36.6
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 9.0e-152 542.0 945 37.6
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 6.4e-150 535.8 886 36.9
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 1.1e-149 535.0 891 37.1
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 9.3e-149 531.9 889 37.2
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 7.8e-148 528.9 942 36.9
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.1e-146 525.0 914 37.6
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.6e-145 521.2 929 37.6
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 4.5e-143 513.1 890 36.6
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 2.2e-142 510.8 890 36.4
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 2.4e-141 507.3 892 36.2
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 7.1e-141 505.8 935 36.7
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 1.2e-140 505.0 891 37.1
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 8.1e-137 492.3 957 35.1
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 8.7e-131 472.2 791 38.6
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 4.8e-129 466.5 763 36.6
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 2.2e-126 457.6 843 36.2
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.8e-123 448.0 822 35.0
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 6.7e-123 446.0 913 32.7
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 2.2e-121 441.0 928 33.8
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 2.8e-121 440.7 671 39.6
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 1.1e-117 428.7 911 33.5
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 1.1e-112 412.1 573 39.6
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 2.7e-108 397.5 401 51.6
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 5.5e-101 373.2 535 39.3
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-100 372.1 967 30.5
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 8.0e-100 369.4 416 48.8
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 7.0e-96 356.3 952 30.5
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 2.5e-93 347.8 655 34.7
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.4e-88 331.3 474 41.1
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 4.2e-85 320.5 705 33.2
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 2.1e-84 318.2 940 28.6
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 5.2e-83 313.5 945 28.7
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 9.1e-80 302.8 936 28.0
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 1.6e-71 275.4 503 34.4
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 2.7e-71 274.6 525 33.0
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 5.9e-71 273.5 559 33.1
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.6e-63 247.3 800 28.1
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 2.3e-59 235.0 203 56.7
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 6.4e-57 226.9 364 37.9
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.1e-55 221.9 450 33.3
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 2.7e-55 221.5 355 37.5
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 3.9e-54 217.6 180 55.6
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-51 209.5 449 33.0
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 4.1e-48 197.6 464 32.1
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.1e-47 195.3 296 42.9
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.3e-46 192.6 403 31.0
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 6.6e-46 190.3 288 39.6
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 8.6e-46 189.9 403 30.5
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 5.2e-43 180.6 738 27.0
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 4.2e-40 171.0 329 33.1
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.5e-37 162.5 479 28.8
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.6e-36 159.1 526 27.8
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 1.8e-35 155.6 249 36.9
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 2.2e-33 148.7 211 37.4
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 3.9e-30 137.9 113 54.9
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.9e-29 135.6 604 24.8
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 6.2e-28 130.6 212 33.0
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 6.2e-28 130.6 212 33.0
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 9.9e-26 123.2 515 27.8
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 8.4e-25 120.2 487 23.8
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 8.4e-25 120.2 186 40.9
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.9e-24 119.0 386 26.9
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.7e-23 115.2 381 26.5
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 3.0e-22 111.7 534 24.0
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 2.1e-20 105.5 420 24.3
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.4e-18 98.2 155 38.1
Sed0011179 Sechium edule HOM05D004345 ORTHO05D005192 2.9e-17 95.1 55 81.8
RcHm_v2.0_Chr6g0264731 Rosa chinensis HOM05D004345 ORTHO05D005192 8.4e-17 93.6 136 41.9
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 4.3e-13 81.3 140 35.7
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 5.7e-13 80.9 142 36.6
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.6e-12 79.3 402 22.9
ATR0194G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.7e-12 78.2 299 27.1
Sc14g0004510 Simmondsia chinensis HOM05D004345 ORTHO05D005192 3.7e-12 78.2 118 34.7
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 5.3e-11 74.3 116 41.4
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 6.9e-11 73.9 225 32.9
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.4e-10 71.6 185 30.8
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-09 69.3 248 27.0
CDE09G0757 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.9e-06 58.2 124 33.1


User provided reference genes

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