Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 8.1e-119 430.6 254 100.0
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.1e-96 357.1 255 83.5
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.3e-95 353.6 254 77.2
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.2e-93 347.1 254 77.6
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.3e-87 327.0 253 73.9
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 2.2e-55 219.9 253 51.0
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 3.7e-55 219.2 252 51.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 2.4e-54 216.5 253 50.2
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.2e-53 214.2 264 50.0
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.6e-53 213.8 257 52.1
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 2.0e-53 213.4 259 50.6
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 4.6e-53 212.2 256 50.0
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 6.6e-52 208.4 254 48.4
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 6.6e-52 208.4 253 49.8
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 8.6e-52 208.0 179 63.1
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.1e-51 207.6 175 63.4
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 1.1e-51 207.6 175 62.9
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.9e-51 206.8 183 59.6
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.3e-51 206.1 257 47.1
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 3.3e-51 206.1 252 50.0
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 4.3e-51 205.7 257 51.0
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 4.3e-51 205.7 249 51.8
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 3.6e-50 202.6 256 48.0
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 4.7e-50 202.2 256 53.1
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 6.2e-50 201.8 254 49.2
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 6.2e-50 201.8 213 55.4
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 4.0e-49 199.1 259 50.2
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 6.8e-49 198.4 215 53.5
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 6.8e-49 198.4 252 50.4
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.2e-48 197.6 247 50.6
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 1.2e-48 197.6 254 49.2
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.5e-48 197.2 260 48.1
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 2.6e-48 196.4 167 64.1
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 5.8e-48 195.3 178 56.7
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 7.5e-48 194.9 264 49.2
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 9.8e-48 194.5 249 49.8
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.3e-47 194.1 172 58.7
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 2.2e-47 193.4 256 49.2
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.9e-47 193.0 245 49.4
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 3.7e-47 192.6 255 46.3
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.9e-47 192.2 256 46.5
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 6.4e-47 191.8 253 45.5
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.9e-46 190.3 177 57.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.4e-46 189.9 242 47.5
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.2e-46 189.5 265 47.5
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 7.0e-46 188.3 314 41.1
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 7.0e-46 188.3 265 47.9
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 7.0e-46 188.3 252 45.6
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 9.2e-46 188.0 199 55.3
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.6e-45 187.2 262 45.0
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.6e-45 187.2 255 45.1
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 3.5e-45 186.0 244 50.4
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 6.0e-45 185.3 181 53.6
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 6.0e-45 185.3 185 56.2
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.3e-44 184.1 165 57.6
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.3e-44 184.1 196 53.6
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.7e-44 183.7 181 53.0
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 3.9e-44 182.6 184 55.4
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.9e-44 182.6 264 46.6
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.9e-44 182.6 254 48.8
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 3.9e-44 182.6 159 59.1
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.9e-44 182.6 161 57.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.0e-44 182.2 264 46.6
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 6.6e-44 181.8 263 47.5
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.6e-44 181.4 275 46.2
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.1e-43 181.0 263 47.1
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.5e-43 180.6 183 55.7
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.9e-43 180.3 243 49.0
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.9e-43 180.3 265 43.4
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.9e-43 180.3 190 53.7
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.9e-43 180.3 161 56.5
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 2.5e-43 179.9 201 53.2
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.3e-43 179.5 185 54.6
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 3.3e-43 179.5 161 56.5
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 4.3e-43 179.1 265 43.4
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 4.3e-43 179.1 177 53.1
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 9.5e-43 177.9 253 46.2
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.1e-42 176.8 193 49.7
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 2.8e-42 176.4 254 44.9
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 2.8e-42 176.4 254 44.9
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 8.1e-42 174.9 245 42.4
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 4.0e-41 172.6 214 49.1
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 4.0e-41 172.6 199 51.3
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 6.8e-41 171.8 255 43.5
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 8.9e-41 171.4 256 43.4
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 2.6e-40 169.9 200 48.0
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 3.4e-40 169.5 255 45.1
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 3.4e-40 169.5 252 43.3
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 3.4e-40 169.5 173 52.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 4.4e-40 169.1 248 45.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 5.8e-40 168.7 203 47.3
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.3e-39 167.5 174 52.3
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.7e-39 167.2 172 53.5
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 3.7e-39 166.0 191 53.4
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 3.7e-39 166.0 191 53.4
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.4e-39 165.2 192 52.6
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.1e-38 164.5 252 42.9
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.1e-38 164.5 211 46.0
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.9e-38 163.7 216 51.4
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 3.2e-38 162.9 259 43.2
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 4.1e-38 162.5 169 52.7
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 5.4e-38 162.2 204 47.1
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 9.2e-38 161.4 259 42.1
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.1e-37 160.2 168 50.6
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 3.5e-37 159.5 176 49.4
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 7.8e-37 158.3 249 43.0
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.7e-36 157.1 186 51.1
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.7e-36 157.1 160 51.9
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 2.3e-36 156.8 169 52.1
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.0e-36 156.4 170 51.8
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 5.1e-36 155.6 164 48.8
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.9e-35 153.7 253 40.3
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.9e-35 153.7 171 53.8
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.3e-35 152.5 176 51.7
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 9.5e-35 151.4 186 47.3
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 4.7e-34 149.1 191 49.2
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 8.1e-34 148.3 152 52.6
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 8.1e-34 148.3 176 46.6
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 6.8e-33 145.2 163 47.9
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-32 143.7 163 47.9
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.7e-31 140.6 238 37.4
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.1e-30 137.9 193 44.6
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 1.2e-29 134.4 136 54.4
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 2.7e-29 133.3 161 46.0
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.1e-27 127.9 89 66.3
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 9.6e-27 124.8 141 51.8
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 9.6e-27 124.8 283 32.9
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.7e-23 114.0 109 47.7
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.9e-23 113.2 145 47.6
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 3.9e-20 102.8 212 34.0
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 9.6e-19 98.2 82 58.5
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.3e-18 97.8 122 44.3
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.2e-16 91.3 146 40.4
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 2.0e-16 90.5 195 35.4
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 3.4e-16 89.7 177 35.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 5.8e-16 89.0 242 35.5
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.7e-15 87.4 102 44.1
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 1.0e-12 78.2 152 38.2
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.0e-12 78.2 47 76.6
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 1.8e-12 77.4 172 33.1
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 8.7e-12 75.1 123 48.8
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.5e-11 73.6 251 33.1
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 9.6e-11 71.6 52 65.4
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 8.1e-10 68.6 65 53.8
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.2e-06 56.6 155 32.3
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 4.2e-06 56.2 47 51.1
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 4.2e-06 56.2 47 51.1
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 7.1e-06 55.5 92 30.4


User provided reference genes

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