Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 3.3e-143 511.9 298 100.0
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 2.3e-72 276.6 331 53.5
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 6.7e-72 275.0 333 53.8
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 2.6e-71 273.1 301 55.8
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 5.7e-55 218.8 333 43.8
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 4.1e-53 212.6 339 41.6
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 7.7e-52 208.4 312 42.9
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.7e-49 199.9 310 41.3
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 1.8e-48 197.2 304 43.1
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 4.4e-47 192.6 308 41.9
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 5.7e-47 192.2 312 40.1
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 9.8e-47 191.4 313 39.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 4.8e-46 189.1 312 39.7
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 4.8e-46 189.1 312 39.7
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 8.3e-46 188.3 310 38.7
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.4e-45 186.8 312 39.7
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 3.1e-45 186.4 303 41.3
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 3.1e-45 186.4 309 39.8
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 1.6e-44 184.1 315 40.3
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 1.6e-44 184.1 300 39.7
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 2.7e-44 183.3 302 41.1
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 2.7e-44 183.3 297 40.1
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 5.9e-44 182.2 294 40.8
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 7.7e-44 181.8 313 39.6
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 1.5e-42 177.6 301 39.9
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.5e-42 177.6 309 39.5
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.5e-42 176.8 295 40.0
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 3.2e-42 176.4 336 39.6
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 4.2e-42 176.0 311 39.5
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.6e-41 174.1 289 39.4
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 2.1e-41 173.7 294 39.8
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 2.7e-41 173.3 307 39.4
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 3.6e-41 172.9 308 38.6
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 6.1e-41 172.2 302 37.7
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.4e-40 171.0 320 38.1
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.4e-40 171.0 307 38.1
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 2.3e-40 170.2 301 39.5
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 3.0e-40 169.9 308 38.3
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.2e-39 167.9 295 38.3
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 1.2e-39 167.9 320 37.8
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 2.6e-39 166.8 303 40.3
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 2.6e-39 166.8 301 39.9
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.6e-39 166.8 300 41.7
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 4.4e-39 166.0 279 40.1
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.4e-39 166.0 316 36.1
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.7e-38 164.1 297 36.0
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 1.7e-38 164.1 309 34.3
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.7e-38 164.1 309 34.3
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 1.7e-38 164.1 315 37.5
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.2e-38 163.7 309 34.3
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 2.2e-38 163.7 307 39.4
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 4.9e-38 162.5 315 43.2
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 6.3e-38 162.2 315 37.5
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.8e-37 160.6 299 36.8
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 2.4e-37 160.2 302 36.8
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 4.1e-37 159.5 316 36.7
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 4.1e-37 159.5 335 38.2
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 5.4e-37 159.1 302 37.4
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 5.4e-37 159.1 309 37.2
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 1.2e-36 157.9 314 36.0
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 1.2e-36 157.9 317 37.9
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.0e-36 157.1 317 34.1
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 3.5e-36 156.4 314 37.3
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 3.5e-36 156.4 297 37.0
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 4.5e-36 156.0 324 39.2
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 4.5e-36 156.0 302 33.4
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 4.5e-36 156.0 335 34.6
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 1.0e-35 154.8 345 42.3
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 1.7e-35 154.1 336 44.0
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 2.3e-35 153.7 314 37.9
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.3e-35 153.7 327 35.2
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 8.6e-35 151.8 311 37.6
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 1.5e-34 151.0 306 34.0
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.9e-34 150.6 297 36.0
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 2.5e-34 150.2 301 35.9
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.5e-34 150.2 315 37.5
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 7.3e-34 148.7 304 36.8
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 9.5e-34 148.3 306 36.3
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 9.5e-34 148.3 271 36.2
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 1.2e-33 147.9 300 34.3
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 1.6e-33 147.5 306 35.3
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.6e-33 146.4 305 35.1
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 6.1e-33 145.6 300 34.0
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.8e-32 144.1 309 32.4
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 2.3e-32 143.7 376 33.2
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 1.2e-31 141.4 317 35.3
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.2e-31 141.4 325 34.8
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 2.6e-31 140.2 305 41.3
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.6e-31 140.2 310 34.5
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 4.9e-30 136.0 304 36.2
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 8.3e-30 135.2 314 30.6
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 8.3e-30 135.2 294 33.3
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 8.3e-30 135.2 363 32.2
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 1.4e-29 134.4 331 34.1
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 3.5e-28 129.8 295 32.5
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 4.6e-28 129.4 279 34.4
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 5.9e-28 129.0 300 34.0
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.7e-27 127.5 296 33.8
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.7e-27 127.5 296 33.8
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 5.0e-27 125.9 407 28.3
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 8.6e-27 125.2 296 33.4
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 4.3e-26 122.9 294 31.0
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 4.3e-26 122.9 291 33.3
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 4.7e-25 119.4 310 33.9
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.0e-24 118.2 294 33.0
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 5.8e-23 112.5 319 31.0
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 4.9e-22 109.4 301 31.6
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 6.4e-22 109.0 298 30.2
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 5.4e-21 105.9 295 28.5
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 2.3e-19 100.5 103 53.4
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 1.5e-18 97.8 321 27.4
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.3e-18 96.3 163 40.5
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 9.5e-18 95.1 232 32.8
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 1.6e-17 94.4 70 68.6
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 2.8e-17 93.6 133 43.6
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-16 91.7 230 32.2
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.1e-16 90.1 310 30.3
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 8.9e-16 88.6 59 66.1
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.2e-15 88.2 192 37.0
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.5e-15 87.8 59 59.3
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 5.8e-15 85.9 296 26.4
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 5.8e-15 85.9 101 44.6
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 5.8e-15 85.9 104 43.3
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.3e-14 84.7 116 43.1
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 2.4e-13 80.5 234 34.6
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 2.7e-12 77.0 63 55.6
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 2.7e-12 77.0 54 59.3
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 2.7e-12 77.0 60 61.7
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 6.0e-12 75.9 63 54.0
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 3.3e-10 70.1 61 50.8
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 4.7e-09 66.2 270 27.4
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 3.4e-07 60.1 256 28.1
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 1.3e-06 58.2 81 40.7
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 2.2e-06 57.4 213 35.7
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 4.9e-06 56.2 70 42.9


User provided reference genes

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