Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 3.6e-144 515.0 277 100.0
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 1.2e-120 436.8 277 80.5
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 8.9e-119 430.6 277 79.1
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 1.6e-88 330.1 281 63.0
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 4.4e-86 322.0 283 60.4
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 5.8e-86 321.6 287 60.6
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 7.6e-86 321.2 274 61.7
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 9.9e-86 320.9 204 77.9
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 1.3e-85 320.5 285 60.4
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 1.3e-85 320.5 286 59.4
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.7e-85 320.1 278 64.7
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.9e-85 319.3 278 64.4
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 6.4e-85 318.2 274 61.3
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 8.4e-85 317.8 280 59.6
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.1e-84 317.4 285 60.0
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 1.4e-84 317.0 195 82.6
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.4e-84 317.0 284 59.5
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 4.2e-84 315.5 287 59.2
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 5.4e-84 315.1 287 58.5
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 5.4e-84 315.1 285 60.4
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 7.1e-84 314.7 287 59.9
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 1.6e-83 313.5 286 57.0
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 2.7e-83 312.8 285 58.6
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 3.0e-82 309.3 283 59.4
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 3.9e-82 308.9 281 58.4
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.5e-81 307.0 287 58.5
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.5e-81 307.0 287 58.5
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.5e-81 307.0 285 60.7
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 1.9e-81 306.6 285 60.0
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 2.5e-81 306.2 284 57.7
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 3.3e-81 305.8 287 59.2
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 4.3e-81 305.4 278 57.6
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 4.3e-81 305.4 278 57.6
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 4.3e-81 305.4 287 57.5
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 5.6e-81 305.1 287 58.2
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 5.6e-81 305.1 287 56.8
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 9.6e-81 304.3 279 58.1
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 1.3e-80 303.9 279 58.1
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 1.3e-80 303.9 286 57.7
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 1.6e-80 303.5 278 57.6
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 3.6e-80 302.4 290 55.2
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 4.8e-80 302.0 288 56.2
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 4.8e-80 302.0 286 57.7
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 6.2e-80 301.6 278 56.8
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 1.1e-79 300.8 283 57.6
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 1.4e-79 300.4 283 56.9
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 3.1e-79 299.3 287 56.8
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 3.1e-79 299.3 290 57.9
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 4.0e-79 298.9 278 57.6
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 4.0e-79 298.9 286 57.3
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 5.3e-79 298.5 294 56.1
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 5.3e-79 298.5 279 57.7
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 6.9e-79 298.1 274 55.5
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 9.0e-79 297.7 279 57.0
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 9.0e-79 297.7 279 57.0
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 9.0e-79 297.7 280 55.0
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 1.2e-78 297.4 279 57.0
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 2.0e-78 296.6 279 57.0
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 2.0e-78 296.6 279 56.6
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 3.4e-78 295.8 280 56.1
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 3.4e-78 295.8 286 57.3
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 7.6e-78 294.7 286 56.3
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 7.6e-78 294.7 277 54.9
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 1.7e-77 293.5 281 55.5
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 2.2e-77 293.1 291 54.0
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 8.4e-77 291.2 279 56.6
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.1e-76 290.8 284 55.3
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 1.4e-76 290.4 283 54.8
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 1.4e-76 290.4 268 56.0
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 1.4e-76 290.4 282 54.6
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 2.4e-76 289.7 279 56.6
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 2.4e-76 289.7 286 55.2
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.4e-76 289.7 279 56.3
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 5.5e-76 288.5 284 55.3
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 7.1e-76 288.1 286 53.1
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 9.3e-76 287.7 278 56.1
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 6.0e-75 285.0 282 56.4
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 7.9e-75 284.6 223 65.5
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 7.9e-75 284.6 225 65.3
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 1.0e-74 284.3 250 60.4
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 1.3e-74 283.9 288 54.5
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 1.8e-74 283.5 278 54.7
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.9e-74 282.3 279 55.6
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 1.1e-73 280.8 279 55.6
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 1.5e-73 280.4 287 54.7
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.9e-73 280.0 279 55.2
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 3.3e-73 279.3 304 52.6
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 3.3e-73 279.3 282 52.1
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 7.4e-73 278.1 222 61.7
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 7.4e-73 278.1 284 54.2
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 7.4e-73 278.1 223 62.3
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.3e-72 277.3 285 53.0
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 2.8e-72 276.2 284 53.2
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 1.8e-71 273.5 282 52.5
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 6.9e-71 271.6 342 47.1
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.2e-70 270.8 198 67.7
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 2.6e-70 269.6 283 52.3
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 7.6e-70 268.1 292 52.1
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 1.3e-69 267.3 213 63.8
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.7e-69 266.9 222 61.3
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 2.2e-69 266.5 314 50.0
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 3.8e-69 265.8 198 66.2
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 2.5e-68 263.1 302 49.0
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 4.2e-68 262.3 210 63.8
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 3.5e-67 259.2 287 51.6
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 2.3e-66 256.5 275 50.9
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 2.3e-66 256.5 276 50.7
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 5.1e-66 255.4 284 47.9
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 1.9e-65 253.4 279 48.4
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 4.3e-65 252.3 292 49.0
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 5.7e-65 251.9 286 49.0
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 2.8e-64 249.6 211 62.1
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 2.8e-64 249.6 215 58.6
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 3.7e-64 249.2 209 60.8
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 6.3e-64 248.4 308 50.6
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 3.1e-63 246.1 222 57.2
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 4.1e-63 245.7 272 51.1
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 5.9e-62 241.9 198 62.6
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.9e-58 229.2 211 55.9
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.1e-58 228.8 285 49.8
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.1e-57 227.6 227 52.9
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.4e-55 219.9 213 57.3
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.5e-54 217.2 227 53.3
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.7e-48 197.2 171 59.1
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 8.5e-45 184.9 291 38.8
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 8.8e-42 174.9 215 42.3
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.9e-37 159.8 242 43.0
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 5.5e-36 155.6 215 38.1
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 1.2e-35 154.5 195 49.7
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 8.8e-34 148.3 195 48.2
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 7.5e-33 145.2 101 67.3
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 7.5e-33 145.2 125 60.8
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.2e-32 143.7 96 70.8
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 3.5e-30 136.3 280 33.6
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 6.5e-29 132.1 123 56.1
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 4.2e-28 129.4 127 54.3
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 6.1e-19 99.0 88 53.4
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 6.1e-19 99.0 129 41.9
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 6.1e-19 99.0 138 40.6
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 1.3e-16 91.3 207 27.5
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.7e-16 90.9 94 51.1
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 3.3e-12 76.6 135 39.3
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.1e-11 73.9 77 53.2
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 3.6e-11 73.2 197 31.0
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 4.0e-10 69.7 97 43.3
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 5.7e-09 65.9 47 68.1
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 5.7e-09 65.9 92 44.6
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 1.8e-07 60.8 56 51.8
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 2.4e-07 60.5 153 25.5
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 5.4e-07 59.3 44 56.8
arahy.Tifrunner.gnm1.ann1.ZRCJ38 Arachis hypogaea HOM05D004903 ORTHO05D005849 3.5e-06 56.6 65 50.8


User provided reference genes

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