Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 1.4e-107 392.9 183 100.0
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.7e-49 199.9 208 52.9
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.7e-49 199.9 208 52.9
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 7.8e-47 191.0 201 48.8
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.7e-46 189.9 203 50.7
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 5.1e-46 188.3 195 50.8
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 8.7e-46 187.6 195 52.8
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 1.2e-44 183.7 202 52.5
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.2e-44 183.7 217 51.6
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 1.2e-44 183.7 199 50.8
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.2e-44 183.7 202 53.5
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 3.6e-44 182.2 207 49.3
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 4.7e-44 181.8 194 50.5
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 6.2e-44 181.4 205 49.8
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.0e-43 178.7 215 52.1
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 5.2e-43 178.3 205 49.3
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 5.2e-43 178.3 223 48.0
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 6.9e-43 177.9 213 50.2
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 6.9e-43 177.9 183 50.8
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 6.9e-43 177.9 213 50.2
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 2.6e-42 176.0 202 49.5
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 8.4e-41 171.0 206 47.6
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 1.1e-40 170.6 202 49.0
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.4e-40 170.2 212 46.2
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.9e-40 169.9 184 48.4
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.9e-40 169.9 194 47.9
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 3.2e-40 169.1 192 48.4
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.2e-40 168.7 211 46.4
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 4.2e-40 168.7 222 47.3
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.2e-39 167.2 205 47.8
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.2e-39 167.2 195 50.3
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.6e-39 166.8 195 49.2
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.8e-39 164.5 130 61.5
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 7.8e-39 164.5 198 47.0
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 7.8e-39 164.5 227 41.9
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.0e-38 164.1 199 46.7
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.0e-38 162.5 196 48.0
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 6.6e-38 161.4 206 44.7
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 6.6e-38 161.4 198 46.0
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 2.5e-37 159.5 156 54.5
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 2.5e-37 159.5 193 48.7
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 1.3e-36 157.1 193 47.7
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.1e-36 156.4 215 44.7
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 4.8e-36 155.2 202 47.5
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.4e-35 152.9 188 44.1
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.0e-35 152.1 190 46.8
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 1.2e-34 150.6 221 42.5
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 1.5e-34 150.2 207 44.4
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 3.4e-34 149.1 181 48.6
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 5.8e-34 148.3 203 42.4
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 9.9e-34 147.5 195 44.1
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 1.7e-33 146.7 134 53.0
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 1.7e-33 146.7 203 42.9
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 2.2e-33 146.4 129 56.6
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.2e-33 146.4 205 42.0
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.2e-33 146.4 135 57.8
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 2.9e-33 146.0 183 43.2
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 4.9e-33 145.2 125 56.8
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.4e-33 144.8 247 38.1
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.4e-33 144.8 247 38.1
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 8.4e-33 144.4 214 41.6
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 8.4e-33 144.4 213 40.8
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-32 144.1 223 41.3
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 1.9e-32 143.3 136 53.7
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 2.4e-32 142.9 226 40.3
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 3.2e-32 142.5 183 43.2
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 4.2e-32 142.1 160 46.2
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 5.4e-32 141.7 179 48.0
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-31 140.6 133 52.6
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.2e-31 140.6 190 45.3
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.2e-31 140.6 205 41.0
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 2.7e-31 139.4 228 39.0
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 6.0e-31 138.3 184 44.0
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.3e-30 137.1 131 56.5
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 1.8e-30 136.7 145 49.0
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 5.1e-30 135.2 184 41.8
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 5.1e-30 135.2 127 53.5
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 1.5e-29 133.7 124 53.2
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.5e-29 133.7 130 53.1
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.9e-29 133.3 184 42.9
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 3.3e-29 132.5 102 59.8
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.3e-29 132.1 200 41.0
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.3e-29 132.1 118 58.5
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.6e-28 130.2 81 72.8
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.1e-28 129.8 183 39.3
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 4.8e-28 128.6 183 43.2
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.8e-28 128.6 182 44.5
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 6.2e-28 128.3 197 42.6
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 8.1e-28 127.9 87 65.5
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 1.1e-27 127.5 139 48.2
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.4e-27 127.1 167 46.7
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 9.0e-27 124.4 204 40.7
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.2e-26 124.0 133 48.1
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 1.2e-26 124.0 202 42.6
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.5e-26 123.6 89 64.0
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.6e-26 122.9 138 51.4
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.4e-26 122.5 138 51.4
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 5.8e-26 121.7 130 50.8
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.9e-26 120.9 136 50.7
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.9e-26 120.9 136 50.7
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-25 120.6 136 50.0
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 2.2e-25 119.8 227 37.0
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 2.2e-25 119.8 131 49.6
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.9e-25 119.4 128 53.9
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-24 117.5 138 50.0
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.9e-24 116.7 210 36.7
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.9e-24 116.7 136 50.0
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 2.4e-24 116.3 137 48.9
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.2e-23 114.0 184 39.1
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 6.0e-23 111.7 131 46.6
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 1.0e-22 110.9 144 45.1
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 2.3e-22 109.8 239 32.6
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 2.3e-22 109.8 200 36.0
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 3.9e-22 109.0 196 39.3
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 3.9e-22 109.0 149 41.6
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 6.7e-22 108.2 226 37.2
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 1.5e-21 107.1 85 62.4
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 2.5e-21 106.3 84 60.7
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 5.6e-21 105.1 84 58.3
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 5.6e-21 105.1 84 58.3
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 5.6e-21 105.1 84 58.3
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 7.4e-21 104.8 136 41.9
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 2.1e-20 103.2 84 58.3
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 3.7e-20 102.4 134 45.5
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.4e-19 100.5 84 57.1
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.4e-19 100.5 84 57.1
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 4.0e-19 99.0 130 48.5
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.5e-18 97.1 139 45.3
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.5e-18 97.1 139 45.3
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.5e-18 97.1 90 54.4
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 2.0e-18 96.7 141 46.1
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 5.8e-18 95.1 90 53.3
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.7e-17 93.6 213 31.9
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.2e-17 93.2 137 43.8
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 2.9e-17 92.8 140 45.0
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.4e-16 90.5 138 41.3
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 2.5e-16 89.7 133 42.9
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 2.5e-16 89.7 133 42.9
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 3.2e-16 89.4 139 44.6
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 4.2e-16 89.0 86 46.5
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 7.1e-16 88.2 102 45.1
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 9.3e-16 87.8 136 41.2
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 9.3e-16 87.8 136 41.2
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 1.2e-15 87.4 96 51.0
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 1.6e-15 87.0 168 33.9
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 2.7e-15 86.3 141 43.3
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 2.7e-15 86.3 141 43.3
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 3.5e-15 85.9 140 42.9
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 3.5e-15 85.9 140 42.9
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.6e-15 85.5 213 30.5
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 6.0e-15 85.1 188 36.2
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.0e-14 84.3 219 29.7
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 1.3e-14 84.0 139 43.2
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 3.0e-14 82.8 83 50.6
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.1e-13 80.9 74 52.7
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.9e-13 80.1 82 50.0
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 2.2e-12 76.6 196 35.2
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.1e-11 74.3 129 39.5
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 1.4e-11 73.9 71 50.7
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 3.1e-11 72.8 133 40.6
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 4.1e-11 72.4 130 40.0
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 6.9e-11 71.6 87 47.1
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 1.5e-10 70.5 190 33.7
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 1.5e-10 70.5 50 68.0
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.4e-10 69.3 129 37.2
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 3.4e-10 69.3 186 31.7
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 5.9e-10 68.6 186 32.8
A06p41240 Brassica napus HOM05D013829 ORTHO05D015952 2.9e-09 66.2 191 32.5
BraA06t27048Z Brassica rapa HOM05D013829 ORTHO05D015952 2.9e-09 66.2 191 32.5
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.1e-08 64.3 130 36.9
PSO782G3492 Papaver somniferum HOM05D004407 ORTHO05D005074 1.4e-08 63.9 141 38.3
AT3G27355 Arabidopsis thaliana HOM05D013829 ORTHO05D015952 1.9e-08 63.5 191 30.4
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 2.5e-08 63.2 47 63.8
Nitab4.5_0005414g0060 Nicotiana tabacum HOM05D004407 ORTHO05D005074 3.2e-08 62.8 139 34.5
BolC7t44160H Brassica oleracea HOM05D013829 ORTHO05D015952 7.2e-08 61.6 190 30.5
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 1.2e-07 60.8 142 35.2
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 7.9e-07 58.2 89 44.9


User provided reference genes

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