Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.9e-254 882.1 471 100.0
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.2e-210 735.7 472 83.5
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 6.9e-156 554.7 470 64.9
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 5.0e-154 548.5 464 63.4
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 4.7e-152 542.0 478 62.1
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 6.1e-152 541.6 464 64.9
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 3.0e-151 539.3 471 63.5
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.1e-150 537.3 465 62.8
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 5.7e-150 535.0 468 63.0
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.8e-149 532.7 471 61.8
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 6.3e-149 531.6 464 62.1
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.4e-148 529.6 468 62.2
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 2.0e-147 526.6 464 60.3
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 3.4e-147 525.8 471 62.0
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.3e-146 523.9 454 63.9
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.3e-146 523.9 472 59.5
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 3.8e-146 522.3 469 62.9
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 9.4e-145 517.7 467 59.1
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.2e-144 517.3 468 60.5
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.6e-144 516.9 459 60.1
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.6e-144 516.9 467 60.6
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.6e-144 516.9 463 61.3
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 6.1e-144 515.0 469 60.3
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.4e-143 513.8 519 61.7
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 2.6e-142 509.6 464 58.8
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 2.6e-142 509.6 472 60.4
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 7.4e-142 508.1 468 59.2
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 9.7e-142 507.7 468 59.0
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.3e-141 507.3 468 59.0
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 2.8e-141 506.1 473 59.6
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.1e-140 504.2 471 59.0
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.1e-140 504.2 462 59.7
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.1e-140 502.3 466 58.8
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.1e-140 502.3 468 58.1
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 5.3e-140 501.9 436 64.0
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 9.1e-140 501.1 469 57.1
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.0e-138 497.7 464 58.0
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 3.8e-138 495.7 474 57.2
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.5e-137 493.8 474 57.0
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.2e-136 490.7 468 56.8
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.1e-136 490.0 471 59.0
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.1e-136 490.0 470 57.2
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.7e-136 489.6 471 58.8
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 2.7e-136 489.6 468 56.8
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 2.7e-136 489.6 468 56.8
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 3.6e-136 489.2 468 57.1
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 6.1e-136 488.4 471 55.6
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 8.0e-136 488.0 464 56.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 2.3e-135 486.5 468 55.8
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 4.0e-135 485.7 468 56.8
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 6.7e-135 485.0 473 54.1
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.4e-134 482.3 470 57.7
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 5.7e-134 481.9 470 57.2
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.7e-133 480.3 474 56.5
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 2.2e-133 479.9 470 59.1
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 5.3e-132 475.3 471 55.8
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.0e-131 473.4 430 61.2
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 7.7e-131 471.5 691 44.6
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 6.5e-130 468.4 463 54.4
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.5e-129 467.2 471 53.1
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 8.0e-128 461.5 468 57.7
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.4e-127 460.7 411 59.9
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 4.0e-127 459.1 469 54.6
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 5.2e-127 458.8 475 54.5
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 1.5e-126 457.2 468 54.5
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 2.0e-126 456.8 473 54.8
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 4.4e-126 455.7 468 54.7
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.7e-125 452.6 377 64.7
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 6.3e-125 451.8 382 62.6
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 4.5e-123 445.7 464 53.9
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 1.0e-122 444.5 370 63.5
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 2.9e-122 443.0 438 54.8
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.3e-119 433.3 417 56.6
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.1e-116 424.5 555 46.5
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.4e-116 424.1 471 52.2
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 2.3e-114 416.8 396 55.1
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.9e-113 413.7 436 53.2
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.6e-112 410.6 536 48.7
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 6.8e-111 405.2 507 48.9
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.3e-109 401.0 464 49.6
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 2.2e-109 400.2 322 65.2
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 4.9e-109 399.1 470 49.6
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 6.0e-107 392.1 291 68.0
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 6.6e-106 388.7 445 52.6
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.3e-105 386.3 468 49.8
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 2.1e-104 383.6 369 56.4
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 4.7e-104 382.5 477 48.2
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.5e-102 375.2 422 50.9
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.7e-101 374.0 419 52.5
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 2.1e-99 367.1 386 55.2
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 2.3e-98 363.6 417 50.8
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 1.2e-96 357.8 492 45.1
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 6.2e-96 355.5 372 55.1
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.2e-94 351.3 372 54.3
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.4e-92 344.4 488 45.1
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.9e-92 344.0 358 54.5
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.4e-92 342.4 291 61.9
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 3.3e-89 333.2 274 63.5
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.6e-88 330.9 471 45.4
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.2e-88 328.9 310 58.1
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 5.2e-87 325.9 418 48.6
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.2e-84 316.6 254 64.6
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.1e-83 313.9 336 51.2
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 2.5e-81 307.0 479 42.4
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 9.6e-81 305.1 295 54.6
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 2.0e-78 297.4 229 65.1
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.3e-77 294.7 264 59.5
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 3.0e-74 283.5 458 39.3
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.1e-68 265.0 242 56.6
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.6e-67 261.2 386 43.5
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.0e-67 259.2 306 50.7
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 3.0e-66 256.9 533 38.3
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.3e-65 253.4 318 50.6
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.4e-63 248.1 169 70.4
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 8.2e-56 222.2 314 43.0
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.4e-44 184.9 207 53.1
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 5.7e-41 172.9 433 35.1
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 3.1e-39 167.2 124 77.4
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 3.1e-39 167.2 175 56.0
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.1e-39 167.2 434 33.4
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.5e-38 164.9 159 58.5
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 3.4e-38 163.7 568 30.6
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.5e-36 157.5 107 72.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 2.2e-32 144.4 370 31.6
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.3e-31 139.8 169 50.9
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.8e-24 116.7 144 45.1
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 2.6e-22 110.9 152 48.0
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.7e-21 108.2 118 55.1
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.1e-19 99.8 63 79.4
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 8.0e-19 99.4 84 65.5
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.4e-18 98.6 125 44.8
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.8e-18 96.3 143 41.3
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.1e-15 89.0 121 39.7
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.9e-13 80.9 72 55.6
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.9e-13 80.9 72 55.6
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 3.8e-13 80.5 82 58.5
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-13 79.7 72 54.2
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.5e-12 76.6 72 54.2
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 8.8e-10 69.3 82 45.1
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 2.6e-09 67.8 44 68.2
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 5.7e-09 66.6 54 64.8
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 5.4e-07 60.1 88 43.2
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.7e-06 57.8 78 43.6


User provided reference genes

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