Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 4.1e-93 344.7 177 100.0
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 3.8e-83 311.6 177 88.1
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 3.0e-80 302.0 177 85.3
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 1.0e-72 276.9 241 63.1
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.3e-62 243.4 171 72.5
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 9.2e-61 237.3 163 71.8
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 2.1e-60 236.1 173 69.4
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 4.6e-60 235.0 173 71.7
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 1.0e-59 233.8 171 69.0
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 1.7e-59 233.0 162 72.8
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 3.9e-59 231.9 171 69.0
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 6.6e-59 231.1 172 69.2
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 1.5e-58 229.9 162 72.8
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.5e-58 229.9 156 74.4
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 2.5e-58 229.2 164 70.7
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 3.3e-58 228.8 158 72.8
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 3.3e-58 228.8 170 69.4
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 4.3e-58 228.4 171 69.6
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 4.3e-58 228.4 171 66.1
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 4.3e-58 228.4 171 66.1
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 4.3e-58 228.4 162 74.1
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 7.3e-58 227.6 173 67.6
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.2e-57 226.9 169 73.4
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 1.6e-57 226.5 174 67.8
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.8e-57 225.7 171 65.5
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 6.2e-57 224.6 172 67.4
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 1.1e-56 223.8 169 68.6
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 1.8e-56 223.0 162 69.1
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 1.8e-56 223.0 165 69.1
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 2.3e-56 222.6 163 71.2
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 4.0e-56 221.9 165 66.7
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 4.0e-56 221.9 170 70.0
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 4.0e-56 221.9 161 71.4
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 4.0e-56 221.9 168 70.2
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 6.8e-56 221.1 165 65.5
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 6.8e-56 221.1 162 66.7
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 8.9e-56 220.7 159 73.6
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 8.9e-56 220.7 159 73.6
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 8.9e-56 220.7 158 70.3
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 8.9e-56 220.7 173 64.2
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 1.2e-55 220.3 168 64.3
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 1.5e-55 219.9 173 63.0
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 2.0e-55 219.5 166 64.5
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 2.0e-55 219.5 168 67.3
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.0e-55 219.5 167 65.9
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 2.0e-55 219.5 167 65.9
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.6e-55 219.2 159 72.3
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 3.4e-55 218.8 165 65.5
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 5.8e-55 218.0 165 66.1
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 5.8e-55 218.0 164 67.1
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 5.8e-55 218.0 164 67.1
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 7.6e-55 217.6 160 67.5
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 9.9e-55 217.2 162 67.3
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 9.9e-55 217.2 167 64.7
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 9.9e-55 217.2 161 68.3
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 9.9e-55 217.2 152 70.4
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 1.3e-54 216.9 166 63.9
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 1.7e-54 216.5 166 63.9
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 1.7e-54 216.5 166 63.9
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 2.2e-54 216.1 153 69.3
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 2.2e-54 216.1 176 64.2
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.9e-54 215.7 162 66.7
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 2.9e-54 215.7 162 70.4
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 3.7e-54 215.3 162 67.9
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 4.9e-54 214.9 173 64.2
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 6.4e-54 214.5 160 70.6
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 6.4e-54 214.5 162 66.7
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 8.3e-54 214.2 173 64.2
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 1.1e-53 213.8 161 66.5
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 2.4e-53 212.6 165 64.2
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 3.2e-53 212.2 167 64.1
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 3.2e-53 212.2 164 66.5
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 4.1e-53 211.8 173 65.9
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 5.4e-53 211.5 168 63.1
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 7.1e-53 211.1 173 63.0
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 9.2e-53 210.7 165 66.7
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 3.5e-52 208.8 164 62.2
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 3.5e-52 208.8 161 65.2
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 6.0e-52 208.0 162 66.0
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 7.8e-52 207.6 173 62.4
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 1.3e-51 206.8 175 64.0
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.7e-51 206.5 173 61.3
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 3.9e-51 205.3 158 64.6
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 4.3e-50 201.8 147 65.3
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 5.6e-50 201.4 161 62.1
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 1.2e-49 200.3 162 61.7
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.1e-49 199.5 171 62.0
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 2.8e-49 199.1 171 60.2
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 8.1e-49 197.6 140 69.3
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 1.4e-48 196.8 164 61.6
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 1.5e-47 193.4 164 59.8
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 1.5e-47 193.4 164 60.4
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 1.5e-47 193.4 131 74.0
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 4.4e-47 191.8 199 53.8
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 4.4e-47 191.8 136 69.9
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 4.4e-47 191.8 134 73.9
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 1.4e-45 186.8 159 61.0
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 3.2e-45 185.7 134 70.9
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 1.3e-43 180.3 168 61.3
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.0e-43 179.1 134 67.9
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 1.9e-42 176.4 147 57.8
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 3.3e-42 175.6 172 55.8
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 4.3e-42 175.3 136 68.4
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 4.3e-42 175.3 147 59.9
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 4.8e-41 171.8 139 64.0
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 1.8e-40 169.9 133 64.7
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 4.0e-40 168.7 134 66.4
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 5.3e-40 168.3 112 72.3
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 6.4e-38 161.4 138 59.4
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 1.0e-35 154.1 135 63.0
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 1.5e-34 150.2 106 68.9
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.3e-33 147.1 89 75.3
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 5.3e-32 141.7 104 70.2
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 7.6e-31 137.9 111 64.9
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 8.4e-30 134.4 78 82.1
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 2.3e-27 126.3 134 57.5
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 5.1e-27 125.2 120 50.0
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 2.5e-26 122.9 130 53.1
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 6.2e-25 118.2 101 62.4
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 6.2e-25 118.2 80 71.2
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 2.0e-23 113.2 163 38.0
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.9e-21 106.7 66 69.7
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 4.6e-20 102.1 54 85.2
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.5e-18 96.3 84 60.7
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 4.3e-18 95.5 55 81.8
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 1.8e-16 90.1 53 75.5
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 1.5e-15 87.0 59 67.8
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 9.3e-13 77.8 53 71.7
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.5e-10 70.5 60 66.7
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.5e-10 70.5 60 66.7
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 5.7e-10 68.6 84 38.1


User provided reference genes

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