Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 4.0e-48 194.5 103 100.0
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 1.3e-19 99.8 121 57.0
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 2.3e-19 99.0 121 57.0
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 1.6e-17 92.8 128 50.0
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 4.6e-12 74.7 41 85.4
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 6.0e-12 74.3 78 53.8
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.0e-11 73.6 95 48.4
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 1.3e-11 73.2 82 51.2
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 1.3e-11 73.2 104 46.2
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.3e-11 73.2 83 53.0
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.3e-11 73.2 83 53.0
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.7e-11 72.8 100 45.0
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 3.0e-11 72.0 104 46.2
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 3.0e-11 72.0 104 46.2
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 3.0e-11 72.0 102 46.1
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 5.1e-11 71.2 42 78.6
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 6.6e-11 70.9 101 45.5
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 6.6e-11 70.9 41 80.5
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 1.1e-10 70.1 71 56.3
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 1.1e-10 70.1 87 49.4
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 1.1e-10 70.1 45 68.9
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.5e-10 69.7 98 48.0
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.5e-10 69.7 98 46.9
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 1.5e-10 69.7 40 82.5
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 1.5e-10 69.7 42 73.8
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.5e-10 69.7 39 84.6
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 2.5e-10 68.9 65 58.5
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 3.3e-10 68.6 102 45.1
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 5.6e-10 67.8 41 73.2
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 7.3e-10 67.4 44 75.0
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 7.3e-10 67.4 42 76.2
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 7.3e-10 67.4 82 48.8
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 9.6e-10 67.0 100 45.0
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.3e-09 66.6 111 43.2
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.3e-09 66.6 111 43.2
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.3e-09 66.6 40 75.0
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 1.3e-09 66.6 46 71.7
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.6e-09 66.2 75 48.0
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 2.1e-09 65.9 42 73.8
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 3.6e-09 65.1 88 45.5
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 3.6e-09 65.1 41 73.2
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 6.2e-09 64.3 115 43.5
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 6.2e-09 64.3 39 79.5
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 6.2e-09 64.3 39 82.1
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 8.1e-09 63.9 131 40.5
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 8.1e-09 63.9 116 39.7
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 8.1e-09 63.9 116 39.7
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 8.1e-09 63.9 42 71.4
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 1.1e-08 63.5 150 39.3
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 1.1e-08 63.5 150 39.3
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 1.1e-08 63.5 142 40.1
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 1.4e-08 63.2 146 37.7
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.4e-08 63.2 115 40.0
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.4e-08 63.2 112 41.1
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.4e-08 63.2 112 41.1
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 1.4e-08 63.2 41 73.2
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.8e-08 62.8 41 70.7
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 2.4e-08 62.4 83 48.2
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 2.4e-08 62.4 67 52.2
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 2.4e-08 62.4 40 72.5
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 3.1e-08 62.0 146 37.7
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 6.9e-08 60.8 124 40.3
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 6.9e-08 60.8 33 84.8
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 6.9e-08 60.8 41 65.9
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 9.0e-08 60.5 91 42.9
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 9.0e-08 60.5 39 76.9
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.2e-07 60.1 57 54.4
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.2e-07 60.1 103 38.8
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 1.2e-07 60.1 36 77.8
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.5e-07 59.7 43 65.1
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 1.5e-07 59.7 113 39.8
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 2.0e-07 59.3 36 72.2
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.6e-07 58.9 146 34.9
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 2.6e-07 58.9 146 34.9
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.6e-07 58.9 111 41.4
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 3.4e-07 58.5 77 45.5
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 3.4e-07 58.5 44 61.4
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 4.5e-07 58.2 69 49.3
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 5.8e-07 57.8 63 50.8
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 5.8e-07 57.8 103 38.8
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 7.6e-07 57.4 114 36.8
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 1.7e-06 56.2 42 64.3
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.7e-06 56.2 40 65.0
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 1.7e-06 56.2 41 63.4
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 1.7e-06 56.2 41 65.9
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 1.7e-06 56.2 68 45.6
Nn2g11287 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.7e-06 56.2 69 40.6
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.7e-06 56.2 34 82.4
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.7e-06 56.2 41 63.4
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.2e-06 55.8 128 36.7
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.9e-06 55.5 84 39.3
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 2.9e-06 55.5 42 57.1
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.9e-06 55.5 110 39.1
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.9e-06 55.5 42 59.5
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 3.8e-06 55.1 41 61.0
HanXRQChr06g0177631 Helianthus annuus HOM05D007866 ORTHO05D003871 3.8e-06 55.1 35 71.4
HanXRQChr06g0177641 Helianthus annuus HOM05D007866 ORTHO05D003871 3.8e-06 55.1 35 71.4
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 3.8e-06 55.1 140 33.6
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 3.8e-06 55.1 41 61.0
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 3.8e-06 55.1 72 45.8
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 4.9e-06 54.7 110 38.2
DCAR_012139 Daucus carota HOM05D007866 ORTHO05D003871 4.9e-06 54.7 86 41.9
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.4e-06 54.3 58 51.7
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 6.4e-06 54.3 68 45.6
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 6.4e-06 54.3 108 38.9
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 8.4e-06 53.9 69 49.3
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 8.4e-06 53.9 50 52.0


User provided reference genes

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