Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 4.4e-234 814.3 425 100.0
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 1.6e-167 593.2 406 75.9
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 2.1e-164 582.8 423 72.8
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 2.1e-164 582.8 422 73.0
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 6.1e-103 378.6 409 51.6
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 8.0e-103 378.3 429 52.2
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 5.2e-102 375.6 434 50.9
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 2.6e-101 373.2 376 55.3
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 5.8e-101 372.1 420 51.0
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 1.3e-100 370.9 416 51.2
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 4.9e-100 369.0 376 55.1
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 1.4e-99 367.5 378 54.2
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 1.2e-98 364.4 420 50.7
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 1.2e-98 364.4 390 53.8
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 1.2e-98 364.4 377 54.6
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 2.7e-98 363.2 420 49.0
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 6.0e-98 362.1 379 53.6
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 1.0e-97 361.3 416 48.3
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 1.0e-97 361.3 422 48.6
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 1.0e-97 361.3 419 48.7
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 1.3e-97 360.9 379 53.3
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 3.0e-97 359.8 423 50.6
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 1.2e-95 354.4 422 49.3
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 8.0e-95 351.7 360 54.4
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.1e-94 351.3 423 49.6
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 1.4e-94 350.9 417 49.2
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 1.4e-94 350.9 408 48.0
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 1.8e-94 350.5 427 48.5
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 3.1e-94 349.7 419 48.2
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 3.1e-94 349.7 377 52.5
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 8.9e-94 348.2 423 49.2
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 5.8e-93 345.5 421 50.1
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 2.2e-92 343.6 422 48.8
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 6.4e-92 342.0 405 48.1
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 8.3e-92 341.7 367 51.5
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 2.4e-91 340.1 405 48.4
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 5.4e-91 339.0 424 47.2
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 5.4e-91 339.0 369 52.3
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 1.2e-90 337.8 423 45.6
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 1.2e-90 337.8 423 45.6
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 4.6e-90 335.9 366 52.2
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 7.8e-90 335.1 420 46.4
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 1.0e-89 334.7 372 51.1
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.3e-89 334.3 422 48.1
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 5.1e-89 332.4 358 52.2
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 6.6e-89 332.0 419 46.1
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 1.1e-88 331.3 412 48.5
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 5.6e-88 328.9 388 47.4
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 1.6e-87 327.4 403 47.1
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 2.8e-87 326.6 364 48.1
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 4.7e-87 325.9 417 46.3
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 8.1e-87 325.1 425 45.2
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 5.2e-86 322.4 358 49.7
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 1.7e-84 317.4 371 48.5
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 3.2e-83 313.2 333 52.0
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 1.2e-82 311.2 390 44.9
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 3.9e-81 306.2 372 49.5
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 6.6e-81 305.4 359 48.7
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 5.6e-80 302.4 421 45.4
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 1.6e-79 300.8 406 46.8
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 1.6e-79 300.8 427 44.5
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 2.1e-79 300.4 410 43.4
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 2.1e-79 300.4 416 42.3
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 3.1e-78 296.6 405 46.9
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 4.0e-78 296.2 361 45.2
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 5.2e-78 295.8 370 49.7
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 6.8e-78 295.4 360 46.1
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 8.9e-78 295.0 370 46.2
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 1.5e-77 294.3 416 41.6
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 3.4e-77 293.1 417 46.0
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 3.4e-77 293.1 410 42.2
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 3.4e-77 293.1 397 45.1
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 4.4e-77 292.7 396 46.0
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 9.9e-77 291.6 366 48.4
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 9.9e-77 291.6 416 41.3
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 2.2e-76 290.4 335 49.9
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 4.9e-76 289.3 397 43.1
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 6.4e-76 288.9 325 48.9
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 1.9e-75 287.3 372 48.9
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 1.9e-75 287.3 372 48.9
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 5.4e-75 285.8 406 45.6
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 7.1e-75 285.4 322 50.6
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 8.7e-73 278.5 364 46.4
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 1.9e-72 277.3 418 40.7
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 3.3e-72 276.6 397 42.6
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 7.3e-72 275.4 360 45.8
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 1.2e-71 274.6 374 44.9
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 9.3e-67 258.5 298 49.7
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 2.3e-65 253.8 361 43.5
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 2.4e-62 243.8 300 48.7
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 2.4e-62 243.8 283 48.4
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 2.4e-59 233.8 314 46.5
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 5.4e-59 232.6 434 36.4
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 2.3e-57 227.3 387 38.0
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 3.4e-53 213.4 235 54.9
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.7e-52 211.1 364 39.6
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 7.1e-51 205.7 241 51.0
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 7.1e-51 205.7 241 51.0
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 1.8e-49 201.1 368 36.4
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 4.8e-47 193.0 368 37.8
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 4.1e-38 163.3 254 39.0
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 9.0e-38 162.2 223 44.4
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 2.9e-36 157.1 382 30.6
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.7e-31 140.2 137 54.0
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.7e-31 140.2 137 54.0
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 6.9e-30 136.0 402 31.3
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 1.2e-29 135.2 184 46.7
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.7e-28 131.3 236 39.0
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 1.1e-27 128.6 154 51.9
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 4.2e-27 126.7 188 41.5
CSS0045731 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.9e-25 120.2 117 53.0
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 5.7e-24 116.3 321 32.7
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 1.7e-23 114.8 212 39.2
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 1.8e-22 111.3 130 43.1
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 8.5e-20 102.4 376 28.5
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.5e-16 91.7 131 45.0
MCO10G213 Micromonas commoda HOM05D006726 ORTHO05D008328 8.5e-12 75.9 225 28.0
Cre09.g400997 Chlamydomonas reinhardtii HOM05D006726 ORTHO05D008328 5.7e-08 63.2 172 28.5


User provided reference genes

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