Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027486 Sechium edule HOM05D001004 ORTHO05D000653 1.7e-34 148.7 70 100.0
Sed0022274 Sechium edule HOM05D001004 ORTHO05D000653 2.6e-22 108.2 63 82.5
ClCG07G000750 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.8e-15 85.5 64 60.9
Sed0002681 Sechium edule HOM05D001004 ORTHO05D000653 2.2e-13 78.6 64 56.2
ClCG06G013020 Citrullus lanatus HOM05D001004 ORTHO05D000653 4.8e-13 77.4 68 54.4
Sed0001107 Sechium edule HOM05D001004 ORTHO05D000653 6.3e-13 77.0 65 60.0
CsaV3_3G050000 Cucumis sativus L. HOM05D026551 ORTHO05D028958 2.4e-12 75.1 63 57.1
ClCG09G013060 Citrullus lanatus HOM05D026551 ORTHO05D028958 1.2e-11 72.8 63 52.4
CsaV3_5G014630 Cucumis sativus L. HOM05D001004 ORTHO05D000653 1.2e-11 72.8 64 54.7
ClCG06G013030 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.0e-10 69.7 68 51.5
MELO3C018349.2 Cucumis melo HOM05D001004 ORTHO05D000653 1.7e-10 68.9 67 53.7
Sed0022845 Sechium edule HOM05D001004 ORTHO05D000653 2.9e-10 68.2 67 50.7
ClCG09G013040 Citrullus lanatus HOM05D026551 ORTHO05D028958 3.8e-10 67.8 63 44.4
CsaV3_3G050010 Cucumis sativus L. HOM05D026551 ORTHO05D028958 3.8e-10 67.8 69 50.7
CsaV3_5G013330 Cucumis sativus L. HOM05D001004 ORTHO05D000653 3.8e-10 67.8 67 53.7
Peaxi162Scf00714g00213 Petunia axillaris HOM05D001004 ORTHO05D000653 8.5e-10 66.6 68 52.9
TPR.G31260 Trifolium pratense HOM05D001004 ORTHO05D000653 8.5e-10 66.6 64 48.4
Peaxi162Scf00714g00217 Petunia axillaris HOM05D001004 ORTHO05D000653 1.1e-09 66.2 66 54.5
PGSC0003DMG400017587 Solanum tuberosum HOM05D001004 ORTHO05D000653 1.5e-09 65.9 65 53.8
CAN.G1837.2 Capsicum annuum HOM05D001004 ORTHO05D000653 1.9e-09 65.5 64 54.7
ClCG04G001650 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.9e-09 65.5 68 48.5
ClCG07G000740 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.9e-09 65.5 67 50.7
Ciclev10006203m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.9e-09 65.5 66 48.5
Ciclev10006211m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.9e-09 65.5 66 48.5
Solyc10g086090.2 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.9e-09 65.5 71 53.5
Solyc10g086100.2 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.9e-09 65.5 65 56.9
Sopen10g035460 Solanum pennellii HOM05D001004 ORTHO05D000653 1.9e-09 65.5 71 53.5
CARHR181290 Cardamine hirsuta HOM05D001004 ORTHO05D000653 2.5e-09 65.1 64 50.0
CsaV3_5G013360 Cucumis sativus L. HOM05D001004 ORTHO05D000653 3.2e-09 64.7 67 47.8
PGSC0003DMG400017588 Solanum tuberosum HOM05D001004 ORTHO05D000653 3.2e-09 64.7 65 56.9
CAN.G859.1 Capsicum annuum HOM05D001004 ORTHO05D000653 4.2e-09 64.3 71 47.9
CARHR133600 Cardamine hirsuta HOM05D001004 ORTHO05D000653 4.2e-09 64.3 66 48.5
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 4.2e-09 64.3 66 47.0
Nitab4.5_0000754g0140 Nicotiana tabacum HOM05D001004 ORTHO05D000653 4.2e-09 64.3 65 53.8
CAN.G1098.2 Capsicum annuum HOM05D001004 ORTHO05D000653 5.5e-09 63.9 62 56.5
ClCG07G000730 Citrullus lanatus HOM05D001004 ORTHO05D000653 7.2e-09 63.5 50 62.0
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 7.2e-09 63.5 64 46.9
Nitab4.5_0013087g0020 Nicotiana tabacum HOM05D001004 ORTHO05D000653 7.2e-09 63.5 65 52.3
Solyc09g089530.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 7.2e-09 63.5 61 52.5
Sopen10g035470 Solanum pennellii HOM05D001004 ORTHO05D000653 7.2e-09 63.5 65 55.4
CAN.G1871.1 Capsicum annuum HOM05D001004 ORTHO05D000653 9.4e-09 63.2 65 50.8
MELO3C018347.2 Cucumis melo HOM05D001004 ORTHO05D000653 9.4e-09 63.2 64 43.8
Dinv44644 Davidia involucrata HOM05D001004 ORTHO05D000653 9.4e-09 63.2 64 51.6
EL10Ac5g10440 Beta vulgaris HOM05D001004 ORTHO05D000653 1.6e-08 62.4 61 50.8
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 1.6e-08 62.4 64 46.9
Nitab4.5_0003154g0030 Nicotiana tabacum HOM05D001004 ORTHO05D000653 1.6e-08 62.4 70 47.1
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 2.1e-08 62.0 64 46.9
BcaB07g30343 Brassica carinata HOM05D001004 ORTHO05D000653 2.7e-08 61.6 64 45.3
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 2.7e-08 61.6 64 48.4
Solyc09g084450.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 2.7e-08 61.6 61 54.1
AL4G36170 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 4.7e-08 60.8 66 45.5
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 4.7e-08 60.8 64 45.3
PSO384G3535 Papaver somniferum HOM05D001004 ORTHO05D000653 4.7e-08 60.8 66 43.9
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 4.7e-08 60.8 64 46.9
Sed0019846 Sechium edule HOM05D001004 ORTHO05D000653 4.7e-08 60.8 66 47.0
Solyc09g084460.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 4.7e-08 60.8 63 50.8
BraA04t18431Z Brassica rapa HOM05D001004 ORTHO05D000653 6.1e-08 60.5 64 46.9
CSS0031008 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 6.1e-08 60.5 62 46.8
COL.COLO4_05579 Corchorus olitorius HOM05D001004 ORTHO05D000653 6.1e-08 60.5 70 42.9
Carub.0004s2090 Capsella rubella HOM05D001004 ORTHO05D000653 8.0e-08 60.1 64 46.9
CARHR133590 Cardamine hirsuta HOM05D001004 ORTHO05D000653 8.0e-08 60.1 65 43.1
FvH4_4g02870 Fragaria vesca HOM05D001004 ORTHO05D000653 8.0e-08 60.1 64 42.2
Nitab4.5_0006346g0020 Nicotiana tabacum HOM05D001004 ORTHO05D000653 8.0e-08 60.1 66 48.5
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 8.0e-08 60.1 66 45.5
Sed0000530 Sechium edule HOM05D001004 ORTHO05D000653 8.0e-08 60.1 66 47.0
Ciclev10022909m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.0e-07 59.7 64 45.3
FAN12G4135 Fragaria x ananassa HOM05D001004 ORTHO05D000653 1.0e-07 59.7 63 41.3
TPR.G6174 Trifolium pratense HOM05D001004 ORTHO05D000653 1.0e-07 59.7 64 45.3
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.4e-07 59.3 70 41.4
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.4e-07 59.3 70 41.4
AT2G38870 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 1.8e-07 58.9 66 45.5
Prupe.8G228900 Prunus persica HOM05D001004 ORTHO05D000653 1.8e-07 58.9 70 41.4
Sopen09g032390 Solanum pennellii HOM05D001004 ORTHO05D000653 1.8e-07 58.9 64 48.4
Sed0008214 Sechium edule HOM05D001004 ORTHO05D000653 2.3e-07 58.5 66 45.5
Zm00001eb208560 Zea mays HOM05D014452 ORTHO05D000653 2.3e-07 58.5 66 39.4
Carub.0004s2089 Capsella rubella HOM05D001004 ORTHO05D000653 3.0e-07 58.2 64 45.3
Sopen09g032370 Solanum pennellii HOM05D001004 ORTHO05D000653 3.0e-07 58.2 60 50.0
COL.COLO4_05581 Corchorus olitorius HOM05D001004 ORTHO05D000653 4.0e-07 57.8 64 46.9
Manes.01G200000 Manihot esculenta HOM05D000077 ORTHO05D000552 4.0e-07 57.8 66 45.5
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 4.0e-07 57.8 64 42.2
DCAR_011994 Daucus carota HOM05D001004 ORTHO05D000653 5.2e-07 57.4 66 43.9
Thhalv10017502m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 5.2e-07 57.4 64 46.9
FAN17G0323 Fragaria x ananassa HOM05D001004 ORTHO05D000653 5.2e-07 57.4 69 42.0
FAN17G0556 Fragaria x ananassa HOM05D001004 ORTHO05D000653 5.2e-07 57.4 69 42.0
FAN17G2832 Fragaria x ananassa HOM05D001004 ORTHO05D000653 5.2e-07 57.4 69 42.0
Medtr1g075380 Medicago truncatula HOM05D001004 ORTHO05D000653 5.2e-07 57.4 64 43.8
AL4G36210 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 6.7e-07 57.0 69 42.0
Lalb_Chr21g0312251 Lupinus albus HOM05D001004 ORTHO05D000653 6.7e-07 57.0 64 42.2
Os11g0279750 Oryza sativa ssp. japonica HOM05D001004 ORTHO05D000653 6.7e-07 57.0 64 42.2
Solyc09g084470.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 6.7e-07 57.0 63 46.0
HanXRQChr01g0014571 Helianthus annuus HOM05D001004 ORTHO05D000653 8.8e-07 56.6 62 43.5
PGSC0003DMG400003056 Solanum tuberosum HOM05D001004 ORTHO05D000653 8.8e-07 56.6 70 45.7
DCAR_011993 Daucus carota HOM05D001004 ORTHO05D000653 1.2e-06 56.2 64 50.0
Manes.05G086394 Manihot esculenta HOM05D001004 ORTHO05D000653 1.2e-06 56.2 66 39.4
Solyc08g080630.4 Solanum lycopersicum HOM05D001004 ORTHO05D000653 1.2e-06 56.2 70 44.3
Sopen08g028940 Solanum pennellii HOM05D001004 ORTHO05D000653 1.2e-06 56.2 70 44.3
Gohir.A11G128400 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.5e-06 55.8 70 40.0
Gorai.007G143700 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.5e-06 55.8 64 42.2
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 1.5e-06 55.8 64 42.2
Prupe.1G032100 Prunus persica HOM05D001004 ORTHO05D000653 1.5e-06 55.8 64 40.6
THA.LOC109117082 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 1.5e-06 55.8 64 46.9
CiPaw.04G183700 Carya illinoinensis HOM05D001004 ORTHO05D000653 2.0e-06 55.5 66 40.9
COL.COLO4_38470 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.0e-06 55.5 62 43.5
MD13G1208500 Malus domestica HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 43.8
Nitab4.5_0000754g0170 Nicotiana tabacum HOM05D001004 ORTHO05D000653 2.0e-06 55.5 65 46.2
Psat4g107840 Pisum sativum HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 43.8
Potri.016G079050 Populus trichocarpa HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 45.3
RcHm_v2.0_Chr4g0390891 Rosa chinensis HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 43.8
RcHm_v2.0_Chr4g0390951 Rosa chinensis HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 45.3
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 2.0e-06 55.5 64 40.6
BcaC02g07440 Brassica carinata HOM05D001004 ORTHO05D000653 2.6e-06 55.1 64 43.8
C04p66930 Brassica napus HOM05D001004 ORTHO05D000653 2.6e-06 55.1 64 43.8
BolC4t28194H Brassica oleracea HOM05D001004 ORTHO05D000653 2.6e-06 55.1 64 43.8
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 2.6e-06 55.1 64 45.3
Hma1.2p1_0650F.1_g195540 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 2.6e-06 55.1 64 45.3
arahy.Tifrunner.gnm1.ann1.M1DDN9 Arachis hypogaea HOM05D001004 ORTHO05D000653 3.3e-06 54.7 66 42.4
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.3e-06 54.7 69 42.0
Migut.D00400 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.3e-06 54.7 66 42.4
FAN17G2232 Fragaria x ananassa HOM05D001004 ORTHO05D000653 3.3e-06 54.7 69 39.1
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 3.3e-06 54.7 64 40.6
Sp4g21250 Schrenkiella parvula HOM05D001004 ORTHO05D000653 3.3e-06 54.7 66 42.4
vmacro02638 Vaccinium macrocarpon HOM05D001004 ORTHO05D000653 3.3e-06 54.7 66 40.9
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 3.3e-06 54.7 64 45.3
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 4.4e-06 54.3 64 42.2
DCAR_011992 Daucus carota HOM05D001004 ORTHO05D000653 4.4e-06 54.3 59 45.8
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 4.4e-06 54.3 64 42.2
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 4.4e-06 54.3 65 50.8
Prupe.I000300 Prunus persica HOM05D001004 ORTHO05D000653 4.4e-06 54.3 64 40.6
RcHm_v2.0_Chr4g0390841 Rosa chinensis HOM05D001004 ORTHO05D000653 4.4e-06 54.3 64 43.8
Solyc09g083430.3 Solanum lycopersicum HOM05D001004 ORTHO05D000653 4.4e-06 54.3 60 48.3
BcaB01g03622 Brassica carinata HOM05D001004 ORTHO05D000653 5.7e-06 53.9 66 42.4
Glyma.09G103800 Glycine max HOM05D001004 ORTHO05D000653 5.7e-06 53.9 62 45.2
Glyma.20G205900 Glycine max HOM05D001004 ORTHO05D000653 5.7e-06 53.9 64 43.8
HanXRQChr13g0424391 Helianthus annuus HOM05D001004 ORTHO05D000653 5.7e-06 53.9 64 46.9
PSO339G6102 Papaver somniferum HOM05D001004 ORTHO05D000653 5.7e-06 53.9 53 45.3
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 5.7e-06 53.9 64 43.8
CSS0019702 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 7.5e-06 53.5 66 43.9
Cfa006068 Carpinus fangiana HOM05D001004 ORTHO05D000653 7.5e-06 53.5 75 40.0
Cfa008366 Carpinus fangiana HOM05D001004 ORTHO05D000653 7.5e-06 53.5 64 42.2
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 7.5e-06 53.5 64 40.6
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 7.5e-06 53.5 64 40.6
A04p29640 Brassica napus HOM05D001004 ORTHO05D000653 9.7e-06 53.1 64 42.2
BraA04t18430Z Brassica rapa HOM05D001004 ORTHO05D000653 9.7e-06 53.1 64 42.2
Cc03_g04970 Coffea canephora HOM05D001004 ORTHO05D000653 9.7e-06 53.1 64 46.9
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 9.7e-06 53.1 69 40.6
Manes.05G086336 Manihot esculenta HOM05D001004 ORTHO05D000653 9.7e-06 53.1 64 37.5
Manes.15G037300 Manihot esculenta HOM05D001004 ORTHO05D000653 9.7e-06 53.1 64 42.2
Potri.016G078900 Populus trichocarpa HOM05D001004 ORTHO05D000653 9.7e-06 53.1 64 43.8
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 9.7e-06 53.1 64 45.3


User provided reference genes

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