Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027483 Sechium edule HOM05D001070 ORTHO05D010233 2.9e-115 418.7 228 100.0
QL93p0141_0004 Quercus lobata HOM05D001070 ORTHO05D010233 9.2e-29 131.3 111 63.1
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 9.2e-29 131.3 109 67.0
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 5.9e-28 128.6 106 67.0
ClCG11G009260 Citrullus lanatus HOM05D001070 ORTHO05D010233 7.3e-26 121.7 109 60.6
Migut.D01246 Erythranthe guttata HOM05D001070 ORTHO05D010233 9.5e-26 121.3 108 63.0
ScUNg0000260 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.8e-24 117.1 153 54.2
Gorai.010G119900 Gossypium raimondii HOM05D001070 ORTHO05D010233 6.4e-22 108.6 102 56.9
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 2.0e-20 103.6 115 51.3
Solyc00g500040.1 Solanum lycopersicum HOM05D001070 ORTHO05D013014 2.7e-20 103.2 188 43.6
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 1.0e-19 101.3 109 53.2
BraSC59t46556Z Brassica rapa HOM05D001070 ORTHO05D005132 1.7e-19 100.5 109 53.2
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.7e-19 100.5 108 55.6
Solyc00g500191.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.7e-19 100.5 108 55.6
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.7e-19 100.5 108 55.6
C09p25520 Brassica napus HOM05D001070 ORTHO05D010233 5.0e-19 99.0 109 52.3
PSO210G2726 Papaver somniferum HOM05D001070 ORTHO05D010233 1.9e-18 97.1 107 50.5
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.9e-18 97.1 107 50.5
Solyc00g500125.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 1.9e-18 97.1 103 55.3
Nitab4.5_0004841g0070 Nicotiana tabacum HOM05D001070 ORTHO05D022991 4.3e-18 95.9 111 55.9
PSO357G0427 Papaver somniferum HOM05D001070 ORTHO05D010233 9.5e-18 94.7 107 49.5
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.8e-17 93.2 116 46.6
Gorai.006G095000 Gossypium raimondii HOM05D001070 ORTHO05D010233 6.2e-17 92.0 108 49.1
SalBow1G2240 Salvia bowleyana HOM05D001070 ORTHO05D005132 1.1e-16 91.3 80 66.2
Gohir.D12G091540 Gossypium hirsutum HOM05D001070 ORTHO05D010233 2.0e-15 87.0 82 57.3
Eucgr.I00434 Eucalyptus grandis HOM05D001070 ORTHO05D010233 2.6e-15 86.7 105 46.7
Gorai.008G099100 Gossypium raimondii HOM05D001070 ORTHO05D010233 2.6e-15 86.7 82 56.1
Nitab4.5_0004137g0040 Nicotiana tabacum HOM05D001070 ORTHO05D010233 2.6e-15 86.7 90 56.7
GSVIVG01029582001 Vitis vinifera HOM05D001070 ORTHO05D010233 9.8e-15 84.7 106 50.0
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 8.3e-14 81.6 90 52.2
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-13 80.5 106 46.2
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 9.2e-13 78.2 78 59.0
Gorai.012G102000 Gossypium raimondii HOM05D001070 ORTHO05D010233 1.6e-12 77.4 61 65.6
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 2.7e-12 76.6 69 71.0
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 2.7e-12 76.6 69 71.0
BraSC143t45654Z Brassica rapa HOM05D001070 ORTHO05D005132 3.5e-12 76.3 55 67.3
BraSC59t46531Z Brassica rapa HOM05D001070 ORTHO05D010233 3.5e-12 76.3 55 67.3
BolSC47t61061H Brassica oleracea HOM05D001070 ORTHO05D010233 1.0e-11 74.7 55 65.5
FAN09G0308 Fragaria x ananassa HOM05D001070 ORTHO05D010233 1.7e-11 73.9 65 61.5
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 1.9e-10 70.5 115 46.1
C02p28780 Brassica napus HOM05D001070 ORTHO05D010233 2.5e-10 70.1 79 53.2
Solyc00g500190.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.5e-10 70.1 101 55.4
Sed0020782 Sechium edule HOM05D001070 ORTHO05D002096 1.2e-09 67.8 84 59.5
arahy.Tifrunner.gnm1.ann1.9IC8RT Arachis hypogaea HOM05D000533 ORTHO05D002807 1.6e-09 67.4 72 45.8
BraSC58t46457Z Brassica rapa HOM05D001070 ORTHO05D002096 1.6e-09 67.4 49 67.3
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 2.1e-09 67.0 42 73.8
arahy.Tifrunner.gnm1.ann1.R84DZU Arachis hypogaea HOM05D001070 ORTHO05D002096 4.7e-09 65.9 48 66.7
CsaV3_1G025500 Cucumis sativus L. HOM05D001070 ORTHO05D010233 6.2e-09 65.5 88 48.9
EL10Ac2g02883 Beta vulgaris HOM05D001070 ORTHO05D002096 8.1e-09 65.1 47 72.3
Peaxi162Scf00130g00416 Petunia axillaris HOM05D001070 ORTHO05D002096 8.1e-09 65.1 68 66.2
Peaxi162Scf00338g00618 Petunia axillaris HOM05D001070 ORTHO05D002096 8.1e-09 65.1 68 66.2
Peaxi162Scf00536g00047 Petunia axillaris HOM05D001070 ORTHO05D002096 8.1e-09 65.1 68 66.2
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 2.3e-08 63.5 68 64.7
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.3e-08 63.5 68 66.2
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.3e-08 63.5 68 66.2
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.3e-08 63.5 68 66.2
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.3e-08 63.5 68 66.2
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.0e-08 62.8 68 66.2
ClCG02G009780 Citrullus lanatus HOM05D000445 ORTHO05D010658 6.8e-08 62.0 54 61.1
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 8.9e-08 61.6 68 63.2
Lsat_1_v5_gn_0_20081 Lactuca sativa HOM05D001070 ORTHO05D010233 1.2e-07 61.2 88 40.9
Peaxi162Scf01305g00038 Petunia axillaris HOM05D001070 ORTHO05D005132 1.5e-07 60.8 58 58.6
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-07 60.8 129 42.6
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-07 60.8 129 42.6
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 2.6e-07 60.1 108 36.1
PSO541G2875 Papaver somniferum HOM05D001070 ORTHO05D002096 3.4e-07 59.7 108 45.4
Nitab4.5_0002628g0020 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.4e-07 59.3 68 61.8
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.4e-07 59.3 66 63.6
Potri.002G008176 Populus trichocarpa HOM05D001070 ORTHO05D002096 4.4e-07 59.3 56 67.9
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 4.4e-07 59.3 128 43.0
MELO3C001082.2 Cucumis melo HOM05D011856 ORTHO05D013014 1.3e-06 57.8 27 88.9
MELO3C025036.2 Cucumis melo HOM05D011856 ORTHO05D013014 1.3e-06 57.8 27 88.9
Lsat_1_v5_gn_1_88141 Lactuca sativa HOM05D011856 ORTHO05D013014 1.3e-06 57.8 27 88.9
Lsat_1_v5_gn_2_97160 Lactuca sativa HOM05D011856 ORTHO05D013014 1.3e-06 57.8 27 88.9
Lsat_1_v5_gn_3_45940 Lactuca sativa HOM05D011856 ORTHO05D013014 1.3e-06 57.8 27 88.9
Lsat_1_v5_gn_5_181940 Lactuca sativa HOM05D011856 ORTHO05D013014 1.3e-06 57.8 27 88.9
Lsat_1_v5_gn_5_47101 Lactuca sativa HOM05D011856 ORTHO05D013014 1.3e-06 57.8 27 88.9
Oeu051132.1 Olea europaea HOM05D011856 ORTHO05D013014 1.3e-06 57.8 27 88.9
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 1.3e-06 57.8 47 68.1
Sed0021842 Sechium edule HOM05D001070 ORTHO05D002096 2.9e-06 56.6 97 54.6
Medtr7g021690 Medicago truncatula HOM05D001070 ORTHO05D005132 4.9e-06 55.8 103 38.8
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.4e-06 55.5 83 51.8
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.4e-06 55.5 83 51.8
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.4e-06 55.5 83 51.8
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.4e-06 55.5 83 51.8
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.4e-06 55.5 83 51.8
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.4e-06 55.5 83 51.8
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.4e-06 55.5 83 51.8
Sed0000142 Sechium edule HOM05D001070 ORTHO05D002096 8.4e-06 55.1 34 88.2
Sed0025623 Sechium edule HOM05D001070 ORTHO05D002096 8.4e-06 55.1 34 88.2


User provided reference genes

Program Settings