Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.9e-65 252.3 121 100.0
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 3.7e-61 238.0 121 93.4
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 8.8e-55 216.9 118 88.1
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 4.8e-53 211.1 109 91.7
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 6.3e-53 210.7 109 92.7
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.4e-52 208.8 117 81.2
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 9.1e-52 206.8 109 88.1
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.2e-51 206.5 117 82.1
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 2.0e-51 205.7 114 84.2
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 4.5e-51 204.5 122 84.4
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 4.5e-51 204.5 118 81.4
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.9e-51 204.1 121 81.0
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.9e-51 204.1 121 81.0
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 5.9e-51 204.1 121 81.8
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 7.7e-51 203.8 121 80.2
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.0e-50 203.4 113 83.2
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.3e-50 203.0 109 87.2
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.3e-50 203.0 115 86.1
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 2.2e-50 202.2 114 81.6
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.2e-50 202.2 108 85.2
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 8.5e-50 200.3 109 86.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 9.4e-49 196.8 121 81.8
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.6e-48 196.1 113 79.6
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.6e-48 196.1 109 84.4
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 4.7e-48 194.5 101 89.1
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 4.7e-48 194.5 121 76.9
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 8.0e-48 193.7 113 82.3
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.4e-47 193.0 123 78.0
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 1.8e-47 192.6 117 82.1
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 3.0e-47 191.8 112 81.2
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.0e-47 191.8 108 78.7
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 4.0e-47 191.4 107 83.2
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 4.0e-47 191.4 100 88.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 5.2e-47 191.0 117 82.1
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.2e-47 191.0 100 88.0
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 6.8e-47 190.7 113 77.0
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 6.8e-47 190.7 120 76.7
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 6.8e-47 190.7 119 75.6
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.2e-46 189.9 109 79.8
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 2.6e-46 188.7 111 78.4
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.6e-46 188.7 100 87.0
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 2.6e-46 188.7 99 86.9
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 3.4e-46 188.3 114 78.1
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.4e-46 188.3 97 88.7
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 3.4e-46 188.3 111 85.6
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.3e-45 186.4 114 78.9
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 2.8e-45 185.3 121 73.6
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.7e-45 184.9 112 81.2
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.7e-45 184.9 112 81.2
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.3e-45 184.1 117 76.9
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.8e-44 182.6 118 72.0
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.1e-44 181.4 116 75.0
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 4.1e-44 181.4 112 82.1
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 7.0e-44 180.6 121 76.9
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 7.0e-44 180.6 106 81.1
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.2e-43 179.9 113 73.5
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 1.2e-43 179.9 116 74.1
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.2e-43 179.9 121 71.9
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.6e-43 179.5 106 80.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.6e-43 179.5 107 74.8
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 2.0e-43 179.1 122 75.4
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.7e-43 178.7 116 73.3
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.7e-43 178.7 116 73.3
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 5.9e-43 177.6 116 71.6
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 5.9e-43 177.6 118 70.3
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 7.7e-43 177.2 111 72.1
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 7.7e-43 177.2 108 76.9
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.7e-42 176.0 116 72.4
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.7e-42 176.0 116 72.4
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.7e-42 176.0 116 72.4
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 2.2e-42 175.6 114 73.7
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.9e-42 175.3 116 72.4
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 2.9e-42 175.3 121 70.2
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.9e-42 175.3 109 73.4
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.8e-42 174.9 110 76.4
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 3.8e-42 174.9 110 74.5
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 3.8e-42 174.9 110 74.5
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 3.8e-42 174.9 110 74.5
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 3.8e-42 174.9 110 74.5
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 3.8e-42 174.9 114 73.7
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 5.0e-42 174.5 115 72.2
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 5.0e-42 174.5 116 71.6
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 6.5e-42 174.1 119 72.3
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 6.5e-42 174.1 112 74.1
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 6.5e-42 174.1 109 74.3
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 8.5e-42 173.7 110 75.5
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 8.5e-42 173.7 108 72.2
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 8.5e-42 173.7 116 72.4
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 8.5e-42 173.7 121 70.2
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 8.5e-42 173.7 109 75.2
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 8.5e-42 173.7 121 70.2
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 8.5e-42 173.7 108 75.9
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 8.5e-42 173.7 108 76.9
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.1e-41 173.3 102 79.4
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.1e-41 173.3 102 79.4
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.9e-41 172.6 108 75.0
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.9e-41 172.6 117 72.6
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 2.5e-41 172.2 116 72.4
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 3.2e-41 171.8 110 73.6
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 3.2e-41 171.8 116 71.6
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 5.5e-41 171.0 97 81.4
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 5.5e-41 171.0 102 78.4
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 7.2e-41 170.6 97 80.4
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 9.5e-41 170.2 109 71.6
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.2e-40 169.9 108 75.0
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.2e-40 169.9 108 73.1
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.6e-40 169.5 106 77.4
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.6e-40 169.5 105 77.1
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 2.1e-40 169.1 100 78.0
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 2.1e-40 169.1 100 78.0
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.8e-40 168.7 97 77.3
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 6.1e-40 167.5 103 74.8
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 6.1e-40 167.5 121 66.9
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 6.1e-40 167.5 103 74.8
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 8.0e-40 167.2 101 75.2
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 8.0e-40 167.2 108 72.2
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.8e-39 166.0 108 72.2
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 2.3e-39 165.6 108 71.3
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 2.3e-39 165.6 108 71.3
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 4.0e-39 164.9 113 72.6
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 4.0e-39 164.9 113 72.6
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.2e-39 164.5 113 72.6
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 6.8e-39 164.1 113 72.6
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 6.8e-39 164.1 113 72.6
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 6.8e-39 164.1 110 71.8
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.4e-38 161.8 113 72.6
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 4.4e-38 161.4 106 70.8
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.4e-38 161.4 116 67.2
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 1.3e-37 159.8 85 85.9
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.2e-37 159.1 116 68.1
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 4.9e-37 157.9 104 71.2
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 6.3e-37 157.5 116 64.7
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 6.3e-37 157.5 116 64.7
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 1.8e-36 156.0 104 74.0
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 7.0e-36 154.1 100 75.0
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 9.2e-36 153.7 85 81.2
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.0e-34 150.2 88 75.0
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.3e-34 149.1 82 80.5
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 7.3e-33 144.1 109 62.4
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 6.1e-32 141.0 112 59.8
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.0e-31 138.3 123 57.7
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 3.9e-26 121.7 58 94.8
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 5.0e-26 121.3 86 65.1
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 4.0e-23 111.7 111 57.7
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 1.2e-22 110.2 102 52.9
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 9.8e-22 107.1 69 69.6
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 1.7e-21 106.3 102 54.9
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.6e-19 99.8 61 78.7
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.7e-19 99.0 71 60.6
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 3.5e-19 98.6 83 56.6
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 6.6e-18 94.4 54 77.8
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 4.7e-16 88.2 73 53.4
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 3.1e-15 85.5 67 65.7
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.9e-12 76.3 64 54.7
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 2.7e-11 72.4 57 59.6
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 2.8e-08 62.4 49 63.3
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 8.1e-08 60.8 109 39.4
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.4e-07 60.1 55 52.7


User provided reference genes

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