Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.9e-33 145.2 69 100.0
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.5e-14 82.4 45 77.8
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.5e-14 82.4 41 90.2
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.9e-14 82.0 45 77.8
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.5e-14 81.6 50 72.0
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 5.6e-14 80.5 63 57.1
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.6e-14 79.7 44 77.3
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.6e-13 79.0 41 85.4
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.6e-13 79.0 41 85.4
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.1e-13 78.6 41 85.4
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 2.8e-13 78.2 41 82.9
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.8e-13 78.2 41 82.9
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.6e-13 77.8 40 87.5
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 3.6e-13 77.8 41 82.9
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 3.6e-13 77.8 41 82.9
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.6e-13 77.8 41 82.9
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 3.6e-13 77.8 41 82.9
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 6.2e-13 77.0 41 85.4
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 6.2e-13 77.0 41 85.4
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 6.2e-13 77.0 41 78.0
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 8.1e-13 76.6 41 80.5
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 8.1e-13 76.6 40 85.0
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 8.1e-13 76.6 40 85.0
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 8.1e-13 76.6 41 80.5
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 8.1e-13 76.6 41 80.5
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 8.1e-13 76.6 41 80.5
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 8.1e-13 76.6 41 80.5
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.1e-12 76.3 40 87.5
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.1e-12 76.3 40 85.0
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.1e-12 76.3 41 80.5
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.4e-12 75.9 41 80.5
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.4e-12 75.9 41 80.5
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.4e-12 75.9 41 80.5
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.4e-12 75.9 41 80.5
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.4e-12 75.9 41 80.5
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.4e-12 75.9 41 80.5
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.4e-12 75.9 41 80.5
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.4e-12 75.9 41 78.0
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.4e-12 75.9 41 80.5
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 78.0
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 82.9
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 78.0
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 80.5
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 78.0
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 80.5
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 78.0
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 82.9
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 78.0
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 78.0
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.8e-12 75.5 40 85.0
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 78.0
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 78.0
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 78.0
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 80.5
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.8e-12 75.5 41 80.5
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 2.4e-12 75.1 41 80.5
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 2.4e-12 75.1 41 78.0
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.4e-12 75.1 43 76.7
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 2.4e-12 75.1 41 80.5
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 2.4e-12 75.1 40 82.5
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 2.4e-12 75.1 40 82.5
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 3.1e-12 74.7 41 80.5
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 3.1e-12 74.7 41 78.0
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 3.1e-12 74.7 40 82.5
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.0e-12 74.3 41 78.0
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 4.0e-12 74.3 41 78.0
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 4.0e-12 74.3 41 78.0
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 4.0e-12 74.3 41 78.0
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 4.0e-12 74.3 41 78.0
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.0e-12 74.3 40 82.5
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 4.0e-12 74.3 41 78.0
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 4.0e-12 74.3 41 80.5
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 4.0e-12 74.3 41 78.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 4.0e-12 74.3 40 80.0
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 5.3e-12 73.9 41 78.0
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 6.9e-12 73.6 41 78.0
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 6.9e-12 73.6 41 78.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 6.9e-12 73.6 41 78.0
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 6.9e-12 73.6 41 75.6
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.9e-12 73.6 41 78.0
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 9.0e-12 73.2 41 78.0
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 9.0e-12 73.2 41 78.0
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 9.0e-12 73.2 40 80.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 9.0e-12 73.2 41 78.0
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 1.2e-11 72.8 41 78.0
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.2e-11 72.8 41 78.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.5e-11 72.4 40 82.5
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.5e-11 72.4 40 82.5
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.5e-11 72.4 41 75.6
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 2.0e-11 72.0 41 75.6
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 2.0e-11 72.0 40 77.5
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.0e-11 72.0 41 78.0
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.6e-11 71.6 41 75.6
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.6e-11 71.6 41 75.6
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.6e-11 71.6 41 75.6
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.6e-11 71.6 41 75.6
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 2.6e-11 71.6 41 75.6
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.6e-11 71.6 40 80.0
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.6e-11 71.6 41 75.6
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.6e-11 71.6 36 86.1
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.6e-11 71.6 36 86.1
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 3.4e-11 71.2 41 75.6
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 3.4e-11 71.2 41 75.6
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 3.4e-11 71.2 41 78.0
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 4.5e-11 70.9 36 86.1
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.5e-11 70.9 36 86.1
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 4.5e-11 70.9 36 86.1
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 5.8e-11 70.5 41 73.2
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 7.6e-11 70.1 40 77.5
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 9.9e-11 69.7 36 88.9
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 9.9e-11 69.7 36 88.9
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.3e-10 69.3 41 78.0
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.7e-10 68.9 40 75.0
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 2.2e-10 68.6 41 78.0
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.8e-10 67.8 35 85.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 6.4e-10 67.0 41 73.2
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-09 65.9 40 70.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.4e-09 65.9 40 70.0
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 7.1e-09 63.5 40 72.5
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.6e-08 62.4 36 75.0
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.1e-08 62.0 36 72.2
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 7.9e-08 60.1 30 86.7
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.3e-07 59.3 40 65.0
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 3.3e-06 54.7 26 88.5


User provided reference genes

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