Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 4.9e-174 614.4 312 100.0
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 2.4e-128 462.6 323 73.7
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 5.0e-126 454.9 312 74.0
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 9.0e-120 434.1 245 85.7
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.6e-108 396.7 241 77.6
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 3.0e-107 392.5 265 71.7
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 2.6e-106 389.4 287 67.6
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 5.7e-106 388.3 265 70.9
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 3.7e-105 385.6 261 69.7
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 3.7e-105 385.6 265 71.3
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 8.2e-105 384.4 261 69.7
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 2.4e-104 382.9 261 70.9
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 2.4e-104 382.9 258 71.3
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 3.1e-104 382.5 307 63.2
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 4.1e-104 382.1 242 74.4
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.2e-103 380.6 262 69.5
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 1.2e-103 380.6 305 64.3
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.6e-103 380.2 261 69.0
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 2.0e-103 379.8 267 69.3
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 2.6e-103 379.4 257 70.8
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 2.6e-103 379.4 308 63.3
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 1.0e-102 377.5 258 69.0
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 1.3e-102 377.1 235 75.3
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 1.7e-102 376.7 233 76.4
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 1.7e-102 376.7 233 76.0
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 2.2e-102 376.3 262 69.8
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 2.9e-102 375.9 249 72.3
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 3.8e-102 375.6 244 72.1
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 6.5e-102 374.8 306 64.1
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 8.5e-102 374.4 236 74.2
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 8.5e-102 374.4 247 72.5
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 2.5e-101 372.9 266 68.8
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 5.5e-101 371.7 233 73.8
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 9.4e-101 370.9 249 69.9
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 1.2e-100 370.5 233 72.5
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 1.6e-100 370.2 242 72.3
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 1.6e-100 370.2 233 73.8
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 1.6e-100 370.2 242 71.9
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 2.1e-100 369.8 250 70.4
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 2.7e-100 369.4 250 70.4
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 3.6e-100 369.0 250 70.8
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 4.7e-100 368.6 233 73.8
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 4.7e-100 368.6 233 73.8
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 4.7e-100 368.6 262 68.3
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 6.1e-100 368.2 252 70.6
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 6.1e-100 368.2 261 67.8
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 6.1e-100 368.2 233 73.4
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 8.0e-100 367.9 249 70.7
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 1.8e-99 366.7 245 70.2
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 2.3e-99 366.3 248 69.8
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 4.0e-99 365.5 233 73.4
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 4.0e-99 365.5 235 71.9
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 5.2e-99 365.2 252 67.9
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 1.2e-98 364.0 246 70.3
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 2.0e-98 363.2 249 69.9
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 3.3e-98 362.5 235 72.8
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 4.4e-98 362.1 233 72.1
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 5.7e-98 361.7 247 68.0
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 5.7e-98 361.7 235 72.3
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 7.5e-98 361.3 264 65.5
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 9.7e-98 360.9 266 65.8
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 3.7e-97 359.0 232 70.7
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 3.7e-97 359.0 238 70.6
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 1.4e-96 357.1 234 73.9
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 1.8e-96 356.7 245 68.6
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 3.1e-96 355.9 235 71.1
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 7.0e-96 354.8 233 71.7
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 7.0e-96 354.8 235 71.1
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 9.1e-96 354.4 266 65.8
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 1.2e-95 354.0 258 64.7
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 2.0e-95 353.2 250 67.2
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 2.7e-95 352.8 267 63.7
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 2.7e-95 352.8 238 68.9
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 5.9e-95 351.7 255 67.5
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 7.7e-95 351.3 233 71.7
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 1.0e-94 350.9 285 61.1
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 1.3e-94 350.5 235 69.8
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 2.2e-94 349.7 229 70.3
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 8.5e-94 347.8 236 69.1
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 3.2e-93 345.9 235 70.2
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 7.2e-93 344.7 235 71.5
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 1.2e-92 344.0 248 69.0
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 3.6e-92 342.4 277 62.5
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.8e-91 340.1 245 69.8
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 1.2e-90 337.4 308 58.4
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 4.4e-90 335.5 249 65.5
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 9.8e-90 334.3 234 65.4
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 2.8e-89 332.8 237 67.9
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 3.7e-89 332.4 301 62.8
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 8.3e-89 331.3 234 64.5
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 1.6e-87 327.0 260 61.9
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 2.7e-87 326.2 235 66.4
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 7.7e-87 324.7 251 64.1
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 1.3e-86 323.9 257 63.0
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.7e-86 323.6 266 60.9
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 2.2e-86 323.2 233 63.5
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 2.9e-86 322.8 254 63.0
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 8.5e-86 321.2 259 58.3
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.9e-85 320.1 233 64.4
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 3.2e-85 319.3 232 65.1
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 4.2e-85 318.9 240 60.8
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 8.0e-84 314.7 217 67.3
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 1.0e-83 314.3 217 66.8
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 5.2e-83 312.0 266 62.8
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 7.5e-82 308.1 217 63.6
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 1.7e-81 307.0 233 59.2
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 8.3e-81 304.7 263 60.1
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.7e-79 299.7 234 61.1
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 4.5e-79 298.9 235 60.0
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.3e-78 297.4 228 60.1
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 5.0e-78 295.4 270 55.6
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.5e-77 293.9 219 67.6
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 1.4e-75 287.3 236 58.5
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 1.4e-72 277.3 233 59.7
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 8.9e-67 258.1 236 58.5
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 1.3e-65 254.2 184 63.0
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 4.1e-64 249.2 162 67.9
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 2.0e-63 246.9 186 63.4
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 1.0e-62 244.6 233 53.2
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 3.9e-62 242.7 226 54.0
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 1.2e-60 237.7 287 44.6
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 1.8e-59 233.8 249 53.8
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.3e-57 227.6 199 58.3
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 5.1e-54 215.7 196 56.1
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 1.5e-53 214.2 153 65.4
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.6e-52 210.7 244 49.2
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 1.4e-51 207.6 165 61.2
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 1.2e-50 204.5 169 60.9
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 1.1e-45 188.0 287 39.4
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 8.9e-43 178.3 120 62.5
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.2e-42 177.9 107 81.3
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 1.3e-41 174.5 280 40.4
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 7.3e-37 158.7 128 63.3
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 3.2e-32 143.3 276 38.0
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 4.6e-31 139.4 113 63.7
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 2.5e-29 133.7 135 52.6
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 2.4e-27 127.1 135 51.1
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 3.4e-26 123.2 127 51.2
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 5.5e-24 115.9 72 75.0
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 8.4e-17 92.0 58 74.1
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 2.1e-15 87.4 77 54.5
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 3.9e-14 83.2 94 46.8
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 9.7e-13 78.6 68 55.9
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.4e-11 74.7 81 51.9
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 5.9e-10 69.3 60 55.0


User provided reference genes

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