Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 4.2e-204 714.5 382 100.0
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 2.4e-151 539.3 386 77.5
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 7.6e-137 491.1 388 72.7
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 1.4e-135 486.9 391 70.8
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 1.1e-95 354.4 380 55.0
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 2.7e-94 349.7 405 52.3
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.4e-93 347.4 405 52.3
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 8.8e-93 344.7 384 55.2
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 4.9e-91 339.0 382 53.9
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 8.3e-91 338.2 387 53.7
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.1e-90 337.8 386 54.4
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 7.0e-90 335.1 384 50.8
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 1.6e-89 334.0 393 52.7
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.0e-89 333.6 382 53.1
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 2.9e-88 329.7 414 50.2
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.9e-87 327.0 386 53.9
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 9.5e-87 324.7 389 52.2
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 4.7e-86 322.4 401 49.6
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.4e-85 320.9 387 50.6
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 3.4e-84 316.2 392 49.2
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 5.7e-84 315.5 382 49.0
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.3e-83 314.3 387 49.4
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 3.7e-83 312.8 389 49.9
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 3.7e-83 312.8 368 53.0
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 4.9e-83 312.4 392 50.3
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 3.2e-82 309.7 403 50.1
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.2e-82 309.7 399 49.4
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 3.5e-81 306.2 349 53.9
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.0e-80 304.7 394 47.0
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 8.6e-80 301.6 398 48.5
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.5e-79 300.8 403 47.6
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.6e-79 298.9 400 49.8
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 2.8e-78 296.6 388 46.1
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 3.6e-78 296.2 397 47.1
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 6.2e-78 295.4 370 48.1
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 2.3e-77 293.5 400 48.5
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 3.1e-77 293.1 380 45.5
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 4.0e-77 292.7 400 46.5
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 6.8e-77 292.0 391 47.6
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 2.0e-76 290.4 212 71.2
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 2.6e-76 290.0 384 46.6
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 5.8e-76 288.9 408 44.9
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 7.5e-76 288.5 373 47.2
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 9.8e-76 288.1 340 52.4
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 9.8e-76 288.1 391 46.8
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 3.7e-75 286.2 401 48.1
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 8.3e-75 285.0 277 59.9
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.1e-74 284.6 401 45.6
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.1e-74 284.6 400 46.2
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 1.4e-74 284.3 409 45.5
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.9e-74 283.9 344 48.8
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 2.4e-74 283.5 340 50.6
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 3.2e-74 283.1 360 50.0
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 7.0e-74 282.0 384 46.1
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.2e-73 281.2 388 46.6
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 1.6e-73 280.8 396 46.2
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 3.5e-73 279.6 314 52.9
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.7e-72 277.3 391 44.0
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 5.0e-72 275.8 393 44.8
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 8.6e-72 275.0 254 59.1
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 1.5e-71 274.2 402 43.0
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.9e-71 273.9 429 44.5
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.5e-71 273.5 215 69.3
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.1e-69 268.1 340 50.3
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 6.8e-69 265.4 383 44.6
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 8.9e-69 265.0 237 61.6
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.0e-68 263.8 365 46.3
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 5.8e-68 262.3 349 47.6
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 7.5e-68 261.9 405 45.9
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 1.3e-67 261.2 404 42.1
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.9e-67 260.0 353 44.2
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 3.2e-66 256.5 325 49.2
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 3.2e-66 256.5 338 47.6
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 4.1e-66 256.1 440 41.6
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 4.1e-66 256.1 355 46.8
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 7.8e-65 251.9 414 40.1
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.0e-64 251.5 253 56.9
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.3e-64 250.4 261 54.8
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 2.5e-63 246.9 250 56.4
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 5.6e-63 245.7 382 44.5
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.2e-62 244.6 439 40.1
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.1e-61 241.5 391 43.0
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 1.4e-61 241.1 318 46.2
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 8.9e-61 238.4 421 42.3
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 7.6e-60 235.3 255 53.7
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.1e-58 231.5 391 38.4
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.9e-58 230.7 255 53.7
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.9e-58 230.7 255 53.7
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.9e-58 230.7 255 53.7
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 7.1e-58 228.8 391 39.1
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 2.7e-57 226.9 249 54.6
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 6.0e-57 225.7 255 52.9
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 5.1e-56 222.6 352 40.1
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 2.5e-55 220.3 255 52.2
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 4.3e-55 219.5 181 65.2
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 6.2e-54 215.7 383 41.0
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 8.9e-53 211.8 387 38.8
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.5e-52 211.1 251 51.0
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.8e-52 209.1 381 40.7
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.2e-51 207.2 236 53.4
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 2.2e-51 207.2 404 39.1
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.9e-51 206.8 185 61.1
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 3.8e-51 206.5 236 49.6
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 3.8e-51 206.5 395 38.5
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 6.4e-51 205.7 181 61.3
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 8.4e-51 205.3 418 35.2
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.4e-50 203.8 368 40.2
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 6.6e-48 195.7 215 50.7
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 3.3e-47 193.4 392 38.3
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 9.6e-47 191.8 269 46.8
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 1.3e-46 191.4 347 37.8
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.6e-46 191.0 349 41.5
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 2.1e-46 190.7 262 47.3
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 1.1e-45 188.3 342 40.4
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 9.0e-45 185.3 217 46.1
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 3.2e-42 176.8 253 45.5
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 4.2e-42 176.4 248 47.2
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 1.6e-41 174.5 271 41.3
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.6e-41 174.5 285 40.7
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 2.5e-39 167.2 273 42.1
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.6e-38 163.3 180 51.7
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 8.1e-38 162.2 283 43.1
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 2.2e-35 154.1 283 39.2
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 7.1e-34 149.1 197 42.1
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 3.0e-32 143.7 170 48.8
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 3.3e-31 140.2 115 65.2
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 8.1e-30 135.6 232 42.2
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 4.6e-25 119.8 209 42.1
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 2.3e-24 117.5 103 58.3
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 7.4e-23 112.5 124 47.6
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 9.6e-23 112.1 207 41.5
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 4.8e-22 109.8 191 40.8
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 8.2e-22 109.0 122 50.8
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 8.2e-22 109.0 122 50.8
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.1e-21 108.6 213 37.1
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.4e-21 107.5 84 63.1
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 5.3e-21 106.3 111 51.4
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 5.3e-21 106.3 81 66.7
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 4.5e-20 103.2 246 34.1
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 8.4e-19 99.0 86 59.3
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 1.9e-18 97.8 111 49.5
MELO3C026928.2 Cucumis melo HOM05D004411 ORTHO05D005569 5.5e-18 96.3 102 57.8
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 1.1e-15 88.6 101 47.5
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 1.3e-14 85.1 66 66.7
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.8e-13 81.3 213 30.5
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 9.0e-13 79.0 55 65.5
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 1.0e-11 75.5 81 50.6
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 2.2e-11 74.3 318 27.4
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 2.0e-07 61.2 111 37.8
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 2.5e-07 60.8 87 40.2
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 7.4e-07 59.3 240 28.3
MELO3C031858.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.7e-06 58.2 52 61.5
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 2.2e-06 57.8 155 29.0


User provided reference genes

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