Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.1e-184 649.8 323 100.0
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 3.4e-130 468.8 296 82.1
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 4.5e-130 468.4 296 81.8
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.2e-129 466.1 296 81.4
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.4e-120 436.8 268 83.2
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 9.4e-104 380.9 298 66.4
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 1.6e-103 380.2 259 74.5
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 4.7e-103 378.6 289 67.5
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 8.0e-103 377.9 288 66.7
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 3.0e-102 375.9 260 72.7
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.7e-100 369.0 282 68.4
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 6.3e-100 368.2 264 71.2
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.1e-99 367.5 305 64.6
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.4e-99 367.1 263 71.9
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 5.3e-99 365.2 296 63.9
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.2e-98 364.0 289 66.4
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.6e-98 363.6 256 72.7
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.6e-98 363.6 213 79.3
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.6e-98 363.6 213 81.7
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.6e-98 363.6 213 81.7
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.7e-98 362.8 263 70.7
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.7e-98 362.8 264 70.5
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.7e-98 362.8 264 70.5
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.5e-98 362.5 214 81.8
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 3.5e-98 362.5 232 75.9
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 7.7e-98 361.3 282 67.4
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 7.7e-98 361.3 268 69.4
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 7.7e-98 361.3 219 80.8
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 7.7e-98 361.3 289 64.7
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.0e-97 360.9 264 70.1
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.3e-97 360.5 214 81.3
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.7e-97 360.1 213 81.7
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.7e-97 360.1 238 73.9
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.7e-97 360.1 264 68.2
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 2.2e-97 359.8 285 67.0
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 2.2e-97 359.8 280 68.2
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.9e-97 359.4 233 76.4
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.9e-97 359.4 230 77.8
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.9e-97 359.4 240 75.4
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 3.8e-97 359.0 258 70.5
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 3.8e-97 359.0 239 74.9
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 6.5e-97 358.2 292 62.7
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 6.5e-97 358.2 231 75.8
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 8.5e-97 357.8 282 66.7
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 8.5e-97 357.8 289 64.4
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 8.5e-97 357.8 239 74.5
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.1e-96 357.5 256 69.5
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.1e-96 357.5 289 64.0
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.9e-96 356.7 279 65.9
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.9e-96 356.7 219 79.0
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.5e-96 356.3 284 65.5
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.5e-96 356.3 218 77.5
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.2e-96 355.9 216 78.2
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 3.2e-96 355.9 300 64.0
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 4.2e-96 355.5 217 78.8
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 5.5e-96 355.1 265 67.2
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 5.5e-96 355.1 210 81.0
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 5.5e-96 355.1 233 76.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 7.2e-96 354.8 260 71.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 7.2e-96 354.8 273 67.0
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 7.2e-96 354.8 243 70.8
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 9.4e-96 354.4 233 76.4
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 9.4e-96 354.4 289 63.7
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.2e-95 354.0 271 67.5
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.2e-95 354.0 214 79.0
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-95 353.6 264 68.2
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.6e-95 353.6 310 59.7
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.1e-95 353.2 262 68.3
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.1e-95 353.2 302 62.3
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.1e-95 353.2 291 62.9
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.7e-95 352.8 276 67.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.6e-95 352.4 227 76.2
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 8.0e-95 351.3 220 76.8
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.3e-94 349.7 264 65.2
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.0e-94 349.0 256 69.9
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.2e-94 348.6 256 68.0
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.2e-94 348.6 237 73.8
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 5.2e-94 348.6 310 58.4
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 2.6e-93 346.3 247 69.6
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 2.6e-93 346.3 276 68.1
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 3.4e-93 345.9 215 76.7
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 4.4e-93 345.5 236 70.8
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 5.7e-93 345.1 236 74.2
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.3e-92 344.0 213 77.0
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 4.8e-92 342.0 215 76.3
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.1e-91 340.9 214 76.2
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 5.4e-91 338.6 267 65.2
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.6e-90 337.0 217 74.7
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 3.2e-88 329.3 215 72.6
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.8e-87 326.2 214 72.9
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 6.1e-87 325.1 288 60.8
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.4e-86 323.9 222 70.7
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.5e-85 320.5 269 64.7
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.1e-83 314.3 255 63.1
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-83 313.5 266 63.2
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 2.4e-83 313.2 271 61.6
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.6e-82 310.5 326 52.5
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.3e-81 307.4 278 59.7
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.3e-81 306.6 263 62.0
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.3e-80 302.8 184 79.9
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 5.6e-80 302.0 236 65.3
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.2e-77 294.3 305 53.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 7.5e-77 291.6 213 67.1
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 2.9e-76 289.7 384 46.6
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.1e-75 287.7 184 72.3
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 9.2e-75 284.6 241 57.3
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.9e-72 276.9 219 64.8
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 7.3e-72 275.0 238 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 9.5e-72 274.6 253 52.6
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 3.2e-67 259.6 184 71.7
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.8e-63 246.5 276 48.6
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.9e-60 235.7 184 59.8
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.3e-60 235.0 203 59.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.2e-58 231.1 142 80.3
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 9.5e-56 221.5 192 59.9
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.8e-55 219.9 210 53.8
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 5.2e-54 215.7 143 73.4
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 4.4e-53 212.6 136 77.2
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 8.4e-52 208.4 203 48.3
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.1e-51 208.0 205 55.6
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.4e-51 206.8 216 45.8
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.4e-51 206.8 136 74.3
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 4.1e-51 206.1 201 56.7
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 7.8e-50 201.8 178 58.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 4.0e-46 189.5 112 83.9
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 9.0e-46 188.3 110 80.0
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.7e-44 184.1 211 46.0
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.9e-44 182.6 100 79.0
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 6.4e-44 182.2 186 56.5
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.7e-42 176.8 99 77.8
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 4.3e-40 169.5 302 41.7
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.0e-38 161.8 124 66.1
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.5e-37 161.0 109 72.5
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.2e-36 157.1 222 42.3
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 4.2e-35 152.9 154 52.6
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.6e-34 151.0 102 72.5
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.3e-33 147.9 82 79.3
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.8e-33 147.5 210 40.5
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 3.9e-33 146.4 226 38.5
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 8.7e-33 145.2 123 56.1
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.8e-31 139.4 98 75.5
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 5.8e-29 132.5 81 77.8
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 9.9e-29 131.7 112 61.6
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 9.9e-29 131.7 112 61.6
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 2.2e-28 130.6 75 77.3
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.2e-26 124.8 82 70.7
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 3.3e-24 116.7 140 49.3
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.4e-22 111.3 88 61.4
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.1e-22 110.2 56 80.4
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.7e-20 104.4 64 76.6
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 4.9e-20 102.8 135 43.0
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 2.5e-19 100.5 65 72.3
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 2.7e-18 97.1 129 45.0
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 1.9e-16 90.9 49 79.6
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 4.8e-15 86.3 47 80.9
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.5e-13 81.3 48 79.2
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.9e-13 79.3 133 33.8
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 3.8e-12 76.6 48 72.9
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 1.8e-09 67.8 38 81.6
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 4.3e-08 63.2 86 40.7
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 6.3e-07 59.3 44 61.4


User provided reference genes

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