Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 1.1e-184 649.8 323 100.0
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 1.4e-155 553.1 317 85.8
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 2.4e-155 552.4 316 84.2
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 4.5e-154 548.1 316 83.9
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 4.9e-153 544.7 337 80.7
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 7.4e-117 424.5 310 66.5
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 4.1e-115 418.7 322 63.4
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 4.5e-114 415.2 314 65.3
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 9.4e-112 407.5 317 64.4
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 1.2e-111 407.1 316 63.6
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 1.6e-111 406.8 300 64.7
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 2.3e-110 402.9 323 62.2
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 2.3e-110 402.9 306 64.7
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 5.2e-110 401.7 317 63.7
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 6.7e-110 401.4 314 63.4
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 1.3e-108 397.1 325 60.9
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 6.3e-108 394.8 320 61.9
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 8.2e-108 394.4 316 63.6
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 1.1e-107 394.0 315 62.5
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 1.4e-107 393.7 314 60.8
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 4.1e-107 392.1 314 62.1
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 9.1e-107 391.0 318 61.9
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 4.5e-106 388.7 315 59.7
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 3.8e-105 385.6 317 60.6
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 1.1e-104 384.0 330 59.7
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 2.5e-104 382.9 313 60.4
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 2.1e-103 379.8 335 57.0
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 2.1e-103 379.8 314 58.9
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 2.1e-103 379.8 328 60.4
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 1.4e-102 377.1 321 61.1
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 1.8e-102 376.7 257 67.3
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 4.4e-101 372.1 321 59.5
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 1.1e-99 367.5 316 57.9
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 4.1e-99 365.5 318 58.2
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 4.1e-99 365.5 305 60.0
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 1.2e-98 364.0 317 58.0
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 1.2e-98 364.0 315 58.7
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 1.6e-98 363.6 316 57.0
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 2.7e-98 362.8 275 63.6
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 5.9e-98 361.7 315 58.4
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 7.7e-98 361.3 279 61.3
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.3e-97 360.5 268 64.9
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 2.9e-97 359.4 320 56.9
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 3.8e-97 359.0 281 61.2
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 8.5e-97 357.8 311 59.8
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 1.5e-96 357.1 322 56.5
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.5e-96 357.1 268 64.9
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 1.5e-96 357.1 319 58.0
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 2.5e-96 356.3 322 56.5
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 3.2e-96 355.9 276 63.4
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 3.2e-96 355.9 279 62.4
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 9.4e-96 354.4 276 63.0
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 2.7e-95 352.8 307 58.0
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 2.7e-95 352.8 325 58.2
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 6.1e-95 351.7 311 59.2
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 8.0e-95 351.3 320 57.8
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 1.0e-94 350.9 321 54.8
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 1.0e-94 350.9 322 57.1
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 1.8e-94 350.1 320 56.6
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 2.3e-94 349.7 315 56.5
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 2.3e-94 349.7 317 56.8
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 2.3e-94 349.7 315 56.5
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 6.8e-94 348.2 317 56.8
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 6.8e-94 348.2 299 57.5
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 1.2e-93 347.4 320 57.2
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 1.2e-93 347.4 320 57.2
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 1.2e-93 347.4 273 61.9
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 1.2e-93 347.4 318 55.3
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 2.6e-93 346.3 314 57.3
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 2.6e-93 346.3 275 61.1
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 9.8e-93 344.4 315 56.8
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 1.3e-92 344.0 321 55.8
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 2.2e-92 343.2 316 57.6
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 8.3e-92 341.3 315 53.7
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.1e-91 340.9 222 71.2
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 3.1e-91 339.3 321 54.8
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 3.1e-91 339.3 304 57.2
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 3.1e-91 339.3 241 64.3
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 1.2e-90 337.4 253 63.6
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 4.5e-90 335.5 300 54.0
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 2.9e-89 332.8 253 62.5
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 5.0e-89 332.0 320 55.9
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 6.5e-89 331.6 300 54.0
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 1.1e-88 330.9 272 60.7
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 4.2e-88 328.9 303 53.1
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 4.2e-88 328.9 432 44.0
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 7.2e-88 328.2 305 56.1
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 4.7e-87 325.5 298 54.0
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 2.3e-86 323.2 303 54.8
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 1.2e-85 320.9 320 54.7
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 2.0e-85 320.1 313 53.0
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 7.5e-85 318.2 375 46.7
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 1.2e-82 310.8 333 49.8
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 1.0e-81 307.8 242 59.1
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.7e-81 307.0 318 52.2
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.7e-81 307.0 273 53.1
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 4.9e-76 288.9 272 54.8
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 1.8e-70 270.4 245 53.5
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 1.7e-68 263.8 266 47.7
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 1.4e-67 260.8 245 55.1
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 2.8e-63 246.5 255 49.0
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 8.1e-63 245.0 159 72.3
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 2.9e-60 236.5 245 49.8
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 6.0e-58 228.8 239 49.0
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 5.1e-57 225.7 272 41.9
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 5.6e-56 222.2 247 44.5
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 2.8e-55 219.9 271 46.5
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 1.1e-54 218.0 269 40.9
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 3.8e-44 183.0 154 57.8
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 8.4e-44 181.8 154 57.1
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 1.2e-42 177.9 191 49.2
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 1.0e-41 174.9 137 56.2
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 1.1e-40 171.4 155 56.8
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 2.9e-36 156.8 154 55.8
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 5.6e-32 142.5 128 56.2
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 7.4e-32 142.1 91 73.6
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 8.1e-31 138.7 161 47.8
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 6.9e-30 135.6 145 48.3
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 2.9e-28 130.2 123 55.3
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 9.3e-27 125.2 106 52.8
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 1.3e-25 121.3 133 46.6
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 2.3e-25 120.6 115 50.4
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 2.1e-23 114.0 73 72.6
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 1.1e-22 111.7 74 63.5
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 2.6e-21 107.1 89 55.1
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 1.3e-20 104.8 262 27.1
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 2.5e-19 100.5 104 45.2
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 3.9e-17 93.2 241 29.5
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.4e-14 84.7 66 63.6
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 1.4e-14 84.7 94 43.6
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.8e-14 84.3 66 62.1
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 5.3e-14 82.8 85 52.9
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.6e-13 80.5 66 59.1
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 2.6e-13 80.5 66 60.6
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 3.4e-13 80.1 239 29.7
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 5.9e-13 79.3 66 60.6
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 7.7e-13 79.0 63 57.1
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 5.5e-11 72.8 186 30.1
MBI01_g13088_MAGBIO Magnolia biondii HOM05D006013 ORTHO05D007383 2.7e-10 70.5 296 25.0
Sc25g0004990 Simmondsia chinensis HOM05D006013 ORTHO05D007383 4.6e-10 69.7 257 26.8
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 1.0e-09 68.6 239 26.4
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 1.8e-09 67.8 308 25.0
FAN14G3055 Fragaria x ananassa HOM05D002283 ORTHO05D005725 3.0e-09 67.0 81 43.2
CBR_g45943 Chara braunii HOM05D006013 ORTHO05D007383 8.8e-09 65.5 246 22.8
CARHR078010 Cardamine hirsuta HOM05D006013 ORTHO05D007383 1.5e-08 64.7 252 24.6
Pp3c3_4160 Physcomitrium patens HOM05D006013 ORTHO05D007383 1.9e-08 64.3 244 25.0
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 3.3e-08 63.5 248 25.8
Zm00001eb325150 Zea mays HOM05D006013 ORTHO05D007383 1.3e-07 61.6 263 25.5
FvH4_6g36141 Fragaria vesca HOM05D002283 ORTHO05D005725 1.7e-07 61.2 84 45.2
DCAR_013685 Daucus carota HOM05D006013 ORTHO05D007383 6.3e-07 59.3 253 24.9
GSVIVG01033407001 Vitis vinifera HOM05D006013 ORTHO05D007383 8.2e-07 58.9 298 24.8
Os07g0573800 Oryza sativa ssp. japonica HOM05D006013 ORTHO05D007383 2.4e-06 57.4 247 25.1


User provided reference genes

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