Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 6.1e-283 976.9 504 100.0
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 3.6e-211 738.4 450 84.2
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 1.2e-206 723.4 451 83.8
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 1.7e-205 719.5 450 82.2
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 1.2e-203 713.4 452 83.4
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 1.9e-164 583.2 448 69.4
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 6.9e-162 574.7 450 68.4
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 7.7e-161 571.2 451 67.8
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.2e-158 563.9 462 66.2
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 1.6e-158 563.5 463 65.9
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 2.7e-158 562.8 398 71.9
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 2.7e-158 562.8 450 67.3
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 7.9e-158 561.2 453 67.1
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 3.9e-157 558.9 462 66.0
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 8.8e-157 557.8 468 63.5
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.1e-156 557.4 453 66.2
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.5e-156 557.0 463 65.7
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.0e-156 556.6 444 67.6
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.6e-156 556.2 463 65.7
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 4.4e-156 555.4 371 74.7
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 5.7e-156 555.1 459 65.8
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 5.7e-156 555.1 449 65.7
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 9.7e-156 554.3 459 66.7
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 8.2e-155 551.2 463 64.1
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.4e-154 549.7 457 65.2
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 4.1e-154 548.9 468 64.3
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 5.3e-154 548.5 448 65.8
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 5.3e-154 548.5 447 66.0
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 6.9e-154 548.1 385 74.0
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 6.9e-154 548.1 452 65.3
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.5e-153 547.0 448 66.1
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.0e-153 546.6 465 63.7
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 1.7e-152 543.5 409 69.2
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 2.2e-152 543.1 443 63.7
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.1e-151 540.8 466 64.8
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 5.5e-151 538.5 450 64.9
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 9.4e-151 537.7 504 61.7
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 1.2e-150 537.3 458 63.8
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.6e-150 537.0 449 64.4
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 2.7e-150 536.2 454 65.4
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 7.9e-150 534.6 447 64.4
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 1.0e-149 534.3 447 64.7
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 2.0e-148 530.0 448 62.9
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 3.3e-148 529.3 440 65.9
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 4.4e-148 528.9 445 64.9
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 7.4e-148 528.1 397 70.0
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 1.7e-147 526.9 448 63.2
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 4.8e-147 525.4 486 61.5
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.4e-146 523.1 450 62.4
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 4.1e-146 522.3 350 75.1
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 9.1e-146 521.2 394 69.0
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.2e-145 520.8 368 70.1
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 1.2e-145 520.8 472 60.6
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 2.6e-145 519.6 350 74.6
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 5.9e-145 518.5 374 71.7
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 1.3e-144 517.3 470 61.5
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 2.2e-144 516.5 456 61.6
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 2.2e-144 516.5 406 68.5
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 8.5e-144 514.6 406 67.7
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.9e-143 513.5 447 63.3
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 3.2e-143 512.7 457 62.8
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 9.4e-143 511.1 378 69.0
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.2e-142 510.8 443 62.1
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.2e-142 510.8 448 61.4
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.1e-142 510.0 436 62.4
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 2.7e-142 509.6 478 58.2
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 4.7e-142 508.8 450 60.4
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 1.4e-141 507.3 380 66.8
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 3.0e-141 506.1 373 69.7
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 3.0e-141 506.1 383 68.4
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 6.7e-141 505.0 375 69.1
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 8.8e-141 504.6 524 56.5
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 3.3e-140 502.7 341 72.7
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 9.7e-140 501.1 407 65.4
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 2.8e-139 499.6 381 68.5
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 1.1e-138 497.7 446 60.8
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 4.1e-138 495.7 417 62.8
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 2.7e-137 493.0 446 59.4
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 3.5e-137 492.7 369 65.9
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 4.5e-137 492.3 361 69.8
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 5.9e-137 491.9 448 60.0
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 7.7e-137 491.5 359 67.1
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.3e-136 490.7 447 59.3
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.7e-136 490.3 448 59.8
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 3.8e-136 489.2 423 60.3
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 5.5e-135 485.3 448 58.7
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 9.4e-135 484.6 449 59.0
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 3.6e-134 482.6 445 60.2
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 4.7e-134 482.3 363 67.5
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 4.7e-134 482.3 378 65.1
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 8.0e-134 481.5 446 60.5
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 8.8e-133 478.0 366 66.7
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 3.7e-131 472.6 346 67.9
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 3.7e-131 472.6 346 67.9
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 7.7e-129 464.9 480 55.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.7e-128 463.8 339 67.6
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.1e-127 461.1 455 57.4
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 9.5e-127 458.0 359 64.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-126 457.6 331 68.3
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 6.8e-125 451.8 445 56.0
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 8.8e-125 451.4 339 66.7
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 6.3e-123 445.3 340 68.5
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 1.1e-122 444.5 454 56.6
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.4e-122 444.1 303 72.3
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 3.1e-109 399.8 333 65.8
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 2.6e-108 396.7 344 63.4
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 5.8e-108 395.6 272 69.1
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 6.4e-107 392.1 355 56.3
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 5.6e-103 379.0 319 63.9
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 1.4e-101 374.4 346 55.5
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 4.4e-100 369.4 375 51.2
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.7e-96 357.5 302 65.6
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.6e-92 343.6 251 68.9
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 3.5e-89 333.2 244 69.3
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 4.6e-89 332.8 357 50.1
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.2e-86 324.7 302 57.0
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 6.2e-86 322.4 201 80.6
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 2.9e-83 313.5 261 59.8
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.9e-74 284.3 322 54.3
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 1.1e-69 268.5 295 48.1
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 2.0e-68 264.2 345 42.9
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 9.9e-68 261.9 290 51.0
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 1.7e-67 261.2 187 65.8
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 4.9e-67 259.6 283 48.8
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 2.4e-66 257.3 285 50.9
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 8.7e-64 248.8 170 72.4
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 6.7e-56 222.6 241 53.5
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 6.1e-49 199.5 202 55.4
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.8e-46 190.7 205 56.1
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 5.3e-37 159.8 296 37.8
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 8.8e-32 142.5 121 66.1
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 3.1e-29 134.0 84 79.8
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 4.5e-28 130.2 76 80.3
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 5.9e-28 129.8 83 72.3
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 3.3e-23 114.0 71 78.9
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 5.3e-21 106.7 71 74.6
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 4.5e-20 103.6 87 60.9
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 9.8e-15 85.9 99 49.5
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.2e-12 79.0 57 64.9
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 2.3e-11 74.7 85 54.1


User provided reference genes

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