Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 3.1e-54 214.9 113 100.0
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 9.8e-40 166.8 113 76.1
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 8.3e-39 163.7 106 82.1
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.2e-37 159.8 110 75.5
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 4.5e-37 157.9 110 74.5
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.8e-22 109.4 99 60.6
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 7.0e-22 107.5 109 56.9
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 4.6e-21 104.8 93 64.5
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.0e-20 103.6 96 62.5
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.7e-20 102.8 99 56.6
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.7e-20 102.8 99 56.6
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 3.0e-20 102.1 93 62.4
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 3.9e-20 101.7 93 62.4
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 3.3e-19 98.6 113 52.2
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 9.5e-19 97.1 113 49.6
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 8.0e-18 94.0 108 51.9
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 1.8e-17 92.8 108 51.9
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.3e-17 92.4 113 49.6
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.0e-17 91.7 98 54.1
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 4.0e-17 91.7 98 54.1
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 6.8e-17 90.9 97 54.6
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.6e-16 89.0 98 56.1
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.4e-16 88.6 98 53.1
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.4e-16 88.6 86 59.3
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 4.4e-16 88.2 86 58.1
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 5.8e-16 87.8 99 54.5
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 7.5e-16 87.4 97 55.7
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.3e-15 86.7 99 54.5
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.7e-15 86.3 97 46.4
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.7e-15 86.3 111 45.9
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.2e-15 85.9 107 50.5
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 6.4e-15 84.3 101 50.5
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 8.3e-15 84.0 104 51.9
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 8.3e-15 84.0 116 49.1
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 8.3e-15 84.0 115 47.0
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 8.3e-15 84.0 93 52.7
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.4e-14 83.2 83 59.0
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.4e-14 83.2 111 50.5
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.9e-14 82.8 106 49.1
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.9e-14 82.8 106 49.1
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 2.4e-14 82.4 97 46.4
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 2.4e-14 82.4 110 50.0
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 3.2e-14 82.0 92 52.2
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.2e-14 82.0 97 52.6
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 3.2e-14 82.0 108 43.5
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 4.1e-14 81.6 95 52.6
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 5.4e-14 81.3 70 60.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.4e-14 81.3 96 53.1
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 7.0e-14 80.9 86 53.5
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.2e-14 80.5 98 51.0
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 9.2e-14 80.5 98 51.0
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-13 80.1 96 52.1
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.6e-13 79.7 96 53.1
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.6e-13 79.7 103 44.7
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 2.0e-13 79.3 105 47.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 2.0e-13 79.3 93 48.4
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 2.7e-13 79.0 115 40.9
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.7e-13 79.0 86 52.3
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.7e-13 79.0 86 52.3
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.5e-13 78.6 91 48.4
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 3.5e-13 78.6 112 44.6
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 4.6e-13 78.2 89 52.8
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 4.6e-13 78.2 86 50.0
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 6.0e-13 77.8 80 53.8
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 6.0e-13 77.8 75 57.3
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 7.8e-13 77.4 85 57.6
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 1.0e-12 77.0 110 44.5
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.7e-12 76.3 96 49.0
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.7e-12 76.3 108 44.4
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.3e-12 75.9 114 47.4
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 3.9e-12 75.1 108 40.7
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 5.0e-12 74.7 96 43.8
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 5.0e-12 74.7 96 43.8
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 8.6e-12 73.9 98 45.9
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 8.6e-12 73.9 83 49.4
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.1e-11 73.6 87 51.7
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.5e-11 73.2 103 42.7
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.5e-11 72.4 91 47.3
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 3.3e-11 72.0 103 48.5
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 3.3e-11 72.0 87 48.3
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 3.3e-11 72.0 98 45.9
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 4.3e-11 71.6 86 48.8
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 7.3e-11 70.9 110 41.8
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 9.5e-11 70.5 81 48.1
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 1.2e-10 70.1 92 46.7
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 1.2e-10 70.1 86 47.7
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 1.2e-10 70.1 67 56.7
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 1.2e-10 70.1 104 45.2
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.6e-10 69.7 82 47.6
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 2.8e-10 68.9 66 60.6
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.8e-10 68.9 95 47.4
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.7e-10 68.2 72 51.4
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 6.2e-10 67.8 64 59.4
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 8.1e-10 67.4 98 39.8
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.8e-09 66.2 64 57.8
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 2.3e-09 65.9 81 48.1
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 2.3e-09 65.9 93 48.4
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.1e-09 65.5 83 44.6
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 4.0e-09 65.1 72 54.2
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 5.2e-09 64.7 68 54.4
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 5.2e-09 64.7 68 54.4
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.2e-09 64.7 64 57.8
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 5.2e-09 64.7 82 43.9
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 8.9e-09 63.9 84 42.9
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 8.9e-09 63.9 83 43.4
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 2.0e-08 62.8 72 48.6
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 4.4e-08 61.6 66 48.5
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 5.8e-08 61.2 87 40.2
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 1.7e-07 59.7 68 51.5
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 1.7e-07 59.7 84 47.6
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 3.7e-07 58.5 77 45.5
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.7e-07 58.5 78 43.6
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 4.9e-07 58.2 77 44.2
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 8.3e-07 57.4 76 47.4
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 8.3e-07 57.4 76 47.4
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.1e-06 57.0 76 42.1
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.4e-06 56.6 94 39.4
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 1.4e-06 56.6 76 46.1
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 1.4e-06 56.6 76 46.1
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.4e-06 56.6 77 42.9
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.9e-06 56.2 91 44.0
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 3.2e-06 55.5 91 41.8
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 3.2e-06 55.5 91 41.8
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 3.2e-06 55.5 91 41.8
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 3.2e-06 55.5 90 42.2
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 5.4e-06 54.7 90 41.1
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 7.1e-06 54.3 78 42.3
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 7.1e-06 54.3 91 41.8
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 7.1e-06 54.3 78 42.3
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 9.2e-06 53.9 77 41.6
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 9.2e-06 53.9 74 45.9
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 9.2e-06 53.9 102 37.3


User provided reference genes

Program Settings