Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 1.5e-107 392.9 198 100.0
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 1.4e-94 349.7 197 87.3
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 1.1e-86 323.6 195 83.1
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 5.4e-86 321.2 190 83.2
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 7.3e-83 310.8 195 79.5
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 1.4e-57 226.9 190 60.0
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 5.3e-57 224.9 159 66.7
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 2.2e-55 219.5 189 58.2
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 5.0e-55 218.4 175 62.9
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 8.4e-55 217.6 193 57.5
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 1.4e-54 216.9 183 59.0
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 2.5e-54 216.1 196 57.7
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 5.5e-54 214.9 164 62.8
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 5.5e-54 214.9 185 57.3
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.2e-53 213.8 193 57.0
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 1.2e-53 213.8 189 57.1
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 3.5e-53 212.2 195 57.9
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 4.6e-53 211.8 207 54.1
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 4.6e-53 211.8 195 54.9
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 6.1e-53 211.5 195 53.3
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 7.9e-53 211.1 155 63.2
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 1.0e-52 210.7 193 56.5
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.0e-52 210.7 156 66.7
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 1.3e-52 210.3 156 66.7
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 1.3e-52 210.3 156 66.7
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 3.0e-52 209.1 196 55.6
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 3.9e-52 208.8 156 62.2
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 3.9e-52 208.8 182 58.8
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 5.1e-52 208.4 156 65.4
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 1.5e-51 206.8 194 56.2
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 1.9e-51 206.5 152 63.8
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 5.7e-51 204.9 177 56.5
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 5.7e-51 204.9 162 62.3
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 9.7e-51 204.1 195 55.9
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 1.3e-50 203.8 197 55.8
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 1.6e-50 203.4 193 57.0
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 2.2e-50 203.0 157 63.7
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 2.8e-50 202.6 196 55.1
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 6.3e-50 201.4 181 59.1
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 6.3e-50 201.4 199 55.8
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 1.1e-49 200.7 194 54.1
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 1.4e-49 200.3 154 59.1
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 5.3e-49 198.4 194 52.1
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 6.9e-49 198.0 193 54.9
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 6.9e-49 198.0 155 60.0
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.2e-48 197.2 195 55.9
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.2e-48 197.2 196 55.1
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.2e-48 197.2 202 52.5
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.2e-48 197.2 202 52.5
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 2.0e-48 196.4 197 52.8
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 2.0e-48 196.4 201 53.7
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 2.0e-48 196.4 195 54.4
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 2.0e-48 196.4 156 63.5
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 2.6e-48 196.1 152 62.5
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 3.4e-48 195.7 189 52.4
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 4.5e-48 195.3 196 54.1
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 5.9e-48 194.9 175 58.3
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 2.2e-47 193.0 193 53.9
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 3.8e-47 192.2 192 52.6
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 5.0e-47 191.8 152 61.2
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 5.0e-47 191.8 152 61.2
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 6.5e-47 191.4 157 57.3
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 6.5e-47 191.4 192 52.6
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 5.5e-46 188.3 156 60.9
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 2.1e-45 186.4 156 62.8
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 1.0e-44 184.1 154 59.1
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 1.4e-44 183.7 202 51.0
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 1.4e-44 183.7 156 58.3
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 1.8e-44 183.3 161 54.7
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 2.3e-44 183.0 156 57.7
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 2.3e-44 183.0 191 50.8
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 2.3e-44 183.0 156 57.7
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 2.3e-44 183.0 156 57.7
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 2.3e-44 183.0 157 56.1
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 3.0e-44 182.6 153 62.1
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 3.9e-44 182.2 161 54.7
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 8.8e-44 181.0 188 51.1
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 1.1e-43 180.6 203 50.2
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 2.5e-43 179.5 156 55.8
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.5e-43 179.5 152 57.2
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 3.3e-43 179.1 152 56.6
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 2.2e-42 176.4 160 55.0
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 8.2e-42 174.5 202 48.5
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 1.4e-41 173.7 188 47.3
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 4.1e-41 172.2 152 58.6
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 1.2e-40 170.6 156 54.5
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 5.9e-40 168.3 123 65.9
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 7.7e-40 167.9 194 50.0
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 1.7e-39 166.8 185 49.2
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 2.2e-39 166.4 147 53.1
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 1.1e-38 164.1 124 64.5
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 5.5e-38 161.8 122 67.2
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 7.2e-38 161.4 122 62.3
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 2.1e-37 159.8 124 63.7
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 3.1e-33 146.0 126 57.9
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 5.9e-32 141.7 178 44.4
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 5.9e-32 141.7 122 59.0
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-31 140.2 189 40.2
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 2.9e-31 139.4 97 67.0
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 3.2e-30 136.0 195 43.1
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 8.0e-29 131.3 102 62.7
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 1.0e-28 131.0 101 63.4
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 1.5e-27 127.1 125 48.8
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 2.6e-27 126.3 168 42.9
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 1.7e-26 123.6 83 69.9
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 1.7e-26 123.6 112 54.5
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 1.9e-22 110.2 89 57.3
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 4.2e-22 109.0 87 60.9
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 3.6e-21 105.9 83 61.4
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 6.1e-21 105.1 87 59.8
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 6.1e-21 105.1 159 40.3
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 1.0e-20 104.4 130 39.2
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 5.2e-20 102.1 182 34.6
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 8.8e-20 101.3 119 46.2
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.3e-18 97.4 99 50.5
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.1e-17 94.4 104 46.2
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 5.9e-16 88.6 68 63.2
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 1.0e-15 87.8 109 42.2
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.0e-15 87.8 63 65.1
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.5e-14 84.0 111 43.2
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 4.2e-14 82.4 159 35.8
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-13 80.9 68 51.5
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 1.6e-13 80.5 63 57.1
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 3.6e-13 79.3 68 50.0
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 3.6e-13 79.3 97 44.3
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 2.0e-11 73.6 63 50.8
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 4.1e-09 65.9 57 54.4
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 5.6e-06 55.5 36 66.7


User provided reference genes

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