Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 1.8e-202 709.1 375 100.0
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 8.5e-181 637.1 375 87.7
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 3.8e-173 611.7 375 85.9
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 3.7e-160 568.5 375 81.3
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 5.7e-145 518.1 376 73.7
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 3.7e-144 515.4 376 71.5
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 8.3e-144 514.2 373 70.8
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 1.1e-143 513.8 376 71.3
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 9.1e-143 510.8 373 71.3
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 1.2e-142 510.4 374 70.3
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 5.9e-142 508.1 373 71.3
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 7.7e-142 507.7 372 70.2
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 7.7e-142 507.7 373 71.0
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 8.6e-141 504.2 371 70.6
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 1.5e-140 503.4 375 68.0
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 5.5e-140 501.5 375 69.1
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 7.2e-140 501.1 407 65.8
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 9.5e-140 500.7 374 69.3
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 4.7e-139 498.4 373 70.0
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 4.7e-139 498.4 373 70.5
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 8.0e-139 497.7 373 69.2
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 1.0e-138 497.3 375 68.3
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 4.0e-138 495.4 373 68.1
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 5.2e-138 495.0 373 68.1
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 6.8e-138 494.6 373 68.1
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 1.2e-137 493.8 370 69.7
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.6e-137 492.7 373 68.9
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 5.7e-137 491.5 373 67.6
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 7.5e-137 491.1 373 68.1
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.7e-136 490.0 370 68.9
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 2.8e-136 489.2 373 66.5
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 8.3e-136 487.6 373 68.1
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 3.1e-135 485.7 373 67.6
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 5.4e-135 485.0 372 66.9
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 3.5e-134 482.3 378 66.4
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 1.0e-133 480.7 380 65.8
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 2.3e-133 479.6 374 67.4
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 3.9e-133 478.8 373 67.6
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 8.6e-133 477.6 373 66.8
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 3.3e-132 475.7 406 62.8
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 5.6e-132 474.9 375 67.2
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 5.6e-132 474.9 375 67.2
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 5.6e-132 474.9 397 64.0
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 2.8e-131 472.6 372 65.1
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 2.8e-131 472.6 382 65.4
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 3.6e-131 472.2 375 64.5
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 3.6e-131 472.2 372 64.5
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 6.1e-131 471.5 405 62.7
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 8.0e-131 471.1 368 65.2
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 1.4e-130 470.3 376 65.7
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 1.4e-130 470.3 372 65.1
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 3.1e-130 469.2 374 66.8
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 5.2e-130 468.4 372 64.2
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 1.5e-129 466.8 372 64.5
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 1.5e-129 466.8 372 64.0
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 2.6e-129 466.1 378 65.6
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 4.4e-129 465.3 392 63.3
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 5.8e-129 464.9 372 64.0
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 9.8e-129 464.2 368 64.4
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 1.3e-128 463.8 373 64.1
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 1.7e-128 463.4 367 66.8
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 4.9e-128 461.8 368 63.9
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 2.4e-127 459.5 377 64.5
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 4.1e-127 458.8 372 63.7
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 9.2e-127 457.6 372 64.2
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 1.2e-126 457.2 375 63.2
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 3.5e-126 455.7 372 63.4
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 1.0e-125 454.1 317 74.8
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 3.0e-125 452.6 371 64.2
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 3.9e-125 452.2 372 62.9
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 8.6e-125 451.1 372 62.1
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 4.7e-123 445.3 376 63.0
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.1e-122 444.1 378 63.2
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 2.3e-122 443.0 357 63.9
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 4.4e-121 438.7 373 63.0
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 7.5e-121 438.0 374 61.8
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 7.5e-121 438.0 373 60.3
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 5.4e-119 431.8 374 61.0
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 9.2e-119 431.0 371 62.0
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.6e-118 430.3 314 72.0
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 3.5e-118 429.1 368 61.4
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 6.6e-117 424.9 370 58.9
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 8.6e-117 424.5 389 59.4
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 3.3e-116 422.5 333 66.4
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 7.3e-116 421.4 373 57.6
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 1.4e-114 417.2 329 66.0
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 3.4e-113 412.5 389 58.6
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 4.4e-113 412.1 374 58.8
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.4e-111 407.1 342 64.9
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 9.2e-111 404.4 373 57.4
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 4.0e-106 389.0 378 56.1
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 4.0e-106 389.0 347 59.9
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.7e-104 383.6 373 54.2
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 2.4e-103 379.8 373 54.2
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 5.4e-103 378.6 361 55.7
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 2.1e-102 376.7 370 53.5
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 4.6e-94 349.0 275 66.2
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 6.6e-93 345.1 370 51.4
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 2.6e-89 333.2 373 53.1
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 4.2e-87 325.9 264 65.5
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 2.8e-83 313.2 218 72.5
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 2.9e-80 303.1 275 59.3
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 1.1e-79 301.2 240 64.2
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 4.8e-75 285.8 235 64.3
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 2.9e-72 276.6 239 59.4
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 8.7e-69 265.0 362 40.3
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 7.9e-62 241.9 344 45.3
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 9.1e-58 228.4 239 50.6
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 2.0e-57 227.3 204 61.3
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 4.5e-57 226.1 342 39.2
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 3.5e-49 199.9 387 34.1
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 9.4e-47 191.8 159 64.8
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 3.7e-43 179.9 193 55.4
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 8.5e-32 142.1 389 31.1
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.8e-27 127.1 121 59.5
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 7.7e-25 119.0 132 51.5
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 1.3e-24 118.2 362 27.9
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 8.6e-24 115.5 84 70.2
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 1.2e-22 111.7 81 67.9
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 1.2e-22 111.7 81 66.7
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 3.6e-22 110.2 82 69.5
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 3.6e-22 110.2 161 50.9
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 3.5e-17 93.6 99 50.5
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 1.9e-15 87.8 294 25.9
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 4.3e-15 86.7 98 49.0
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-13 81.6 194 32.0
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 1.4e-10 71.6 132 38.6
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 2.7e-09 67.4 119 39.5


User provided reference genes

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