Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 3.1e-148 528.5 278 100.0
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 4.3e-137 491.5 276 93.1
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 3.6e-136 488.4 276 92.4
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 2.0e-134 482.6 276 91.3
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 3.4e-134 481.9 276 90.6
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.2e-120 436.8 273 82.1
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 6.2e-120 434.5 273 81.7
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 5.2e-119 431.4 273 79.5
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 6.8e-119 431.0 273 79.5
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.6e-118 429.1 273 80.2
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.6e-118 429.1 273 80.2
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 5.8e-118 427.9 273 80.2
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 5.8e-118 427.9 276 79.7
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 7.5e-118 427.6 273 78.8
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.7e-117 426.4 273 78.4
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 3.7e-117 425.2 276 78.3
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 4.9e-117 424.9 273 79.1
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.4e-117 424.5 273 79.5
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.4e-116 423.3 273 78.8
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.9e-116 422.9 276 77.9
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 7.1e-116 421.0 273 79.1
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 4.6e-115 418.3 273 78.8
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.0e-114 417.2 284 77.1
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.3e-114 416.8 275 78.5
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.7e-114 416.4 273 76.9
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.3e-114 416.0 275 78.2
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 2.3e-114 416.0 273 78.4
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 3.0e-114 415.6 275 77.8
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 3.0e-114 415.6 276 76.8
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 3.0e-114 415.6 273 78.0
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 3.0e-114 415.6 275 78.5
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 3.0e-114 415.6 275 78.5
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 5.1e-114 414.8 273 78.0
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 8.6e-114 414.1 273 76.6
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.1e-113 413.7 273 75.8
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.5e-113 413.3 271 77.9
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.5e-113 413.3 273 75.5
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.9e-113 412.9 273 77.3
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.9e-113 412.9 273 76.9
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.9e-113 412.9 276 75.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.5e-113 412.5 273 78.0
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 3.3e-113 412.1 273 76.9
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 4.3e-113 411.8 273 76.9
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 4.3e-113 411.8 273 77.3
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 5.6e-113 411.4 275 77.8
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 7.3e-113 411.0 273 76.9
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 9.5e-113 410.6 273 76.6
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.6e-112 409.8 276 74.6
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.6e-112 409.8 273 78.0
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.6e-112 409.8 273 76.9
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 2.1e-112 409.5 273 75.8
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 2.1e-112 409.5 274 77.0
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 2.1e-112 409.5 273 76.6
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 2.8e-112 409.1 273 76.2
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 2.8e-112 409.1 275 76.7
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.6e-112 408.7 273 77.3
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 4.7e-112 408.3 273 76.6
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 4.7e-112 408.3 273 75.8
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 8.1e-112 407.5 275 77.1
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.1e-111 407.1 273 76.6
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.4e-111 406.8 273 76.9
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.8e-111 406.4 273 76.2
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 3.1e-111 405.6 273 76.2
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.1e-111 405.6 273 76.2
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 5.2e-111 404.8 275 75.3
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 5.2e-111 404.8 273 75.8
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 6.8e-111 404.4 275 76.4
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.5e-110 403.3 275 76.0
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.0e-110 402.9 273 75.5
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 2.0e-110 402.9 273 75.5
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-110 402.5 273 75.1
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 2.6e-110 402.5 273 76.9
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.4e-110 401.7 274 75.9
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 4.4e-110 401.7 273 75.5
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 7.6e-110 401.0 275 73.8
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 9.9e-110 400.6 275 75.3
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 75.2
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.2e-109 399.4 303 70.0
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 3.8e-109 398.7 273 74.7
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.1e-108 397.1 279 73.8
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 5.4e-108 394.8 286 72.0
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.6e-107 393.3 270 77.4
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.0e-106 390.6 292 70.5
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-106 389.8 269 74.7
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 5.1e-106 388.3 315 66.0
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 6.6e-106 387.9 262 76.3
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 6.6e-106 387.9 262 76.3
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 6.6e-106 387.9 262 76.3
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 2.5e-105 386.0 270 74.1
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.6e-104 383.3 275 71.3
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.6e-104 383.3 275 74.2
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 2.1e-104 382.9 278 71.2
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 2.8e-104 382.5 275 71.3
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 3.6e-104 382.1 273 73.3
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 8.1e-104 380.9 271 73.1
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.4e-103 380.2 270 73.3
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.8e-103 379.8 275 74.2
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 3.1e-103 379.0 269 71.4
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.5e-102 376.7 266 72.9
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.4e-100 369.4 333 62.5
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 6.6e-98 361.3 270 72.2
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.5e-97 360.1 325 62.5
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.9e-97 359.8 284 67.3
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.9e-97 359.8 270 70.0
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 2.5e-97 359.4 369 56.9
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.6e-96 356.7 257 74.7
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.1e-96 356.3 272 67.6
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 2.4e-95 352.8 268 65.3
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.2e-94 350.5 269 67.7
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 4.5e-94 348.6 268 64.2
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 5.8e-94 348.2 269 66.9
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.3e-93 347.1 267 67.4
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 8.4e-93 344.4 274 61.7
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 4.2e-92 342.0 257 68.5
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.9e-89 333.2 272 62.1
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.6e-88 330.1 263 64.6
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 6.4e-85 318.2 252 67.1
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 6.4e-85 318.2 211 77.3
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.6e-83 313.5 274 59.5
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.1e-83 313.2 488 43.2
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 4.6e-83 312.0 252 66.7
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 6.0e-83 311.6 488 43.0
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 5.6e-81 305.1 279 60.6
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 7.4e-81 304.7 255 65.5
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 9.6e-81 304.3 256 65.6
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-80 303.5 279 60.6
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 1.4e-79 300.4 263 59.7
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 2.4e-79 299.7 266 59.0
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-78 297.4 279 59.9
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-78 297.4 279 60.2
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 4.5e-78 295.4 279 59.1
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.4e-76 290.4 263 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.9e-76 290.0 263 57.8
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 3.9e-74 282.3 263 56.3
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 8.2e-72 274.6 275 53.8
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 8.2e-72 274.6 260 60.4
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 2.9e-69 266.2 225 64.9
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.9e-68 263.5 280 56.1
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.9e-68 263.5 161 80.1
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-67 260.4 253 58.5
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 2.3e-66 256.5 264 51.9
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.3e-65 252.3 282 56.4
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 5.5e-60 235.3 264 49.6
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 4.4e-57 225.7 251 51.8
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 2.8e-56 223.0 137 80.3
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.4e-55 219.9 274 49.3
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 9.1e-55 218.0 267 50.2
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 6.5e-53 211.8 129 84.5
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.9e-45 186.4 138 70.3
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 8.5e-45 184.9 131 72.5
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 5.5e-44 182.2 412 34.7
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.1e-43 180.3 136 65.4
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.4e-42 177.6 148 62.8
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.8e-42 175.3 161 61.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 4.4e-41 172.6 227 47.6
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 6.5e-37 158.7 131 62.6
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 6.5e-37 158.7 96 82.3
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.0e-34 149.8 102 73.5
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.3e-29 134.4 147 50.3
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 4.2e-28 129.4 258 33.3
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.3e-26 123.6 138 52.9
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 3.0e-26 123.2 290 29.0
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 6.8e-26 122.1 264 31.8
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.9e-21 106.7 70 78.6
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.9e-20 104.0 150 44.7
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-19 100.9 111 52.3
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 2.6e-17 93.6 82 57.3
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 7.5e-17 92.0 69 65.2
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.3e-16 91.3 71 59.2
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.3e-16 91.3 71 59.2
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.9e-16 90.1 67 68.7
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 3.7e-16 89.7 72 62.5
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 4.9e-16 89.4 52 86.5
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 6.4e-16 89.0 52 84.6
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 6.4e-16 89.0 52 84.6
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.3e-16 88.6 59 72.9
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-15 87.8 52 84.6
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-15 87.8 71 56.3
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.9e-15 87.4 71 57.7
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 3.2e-15 86.7 52 84.6
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 2.7e-14 83.6 50 82.0
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 2.7e-14 83.6 53 75.5
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 5.0e-13 79.3 71 60.6
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.7e-08 63.2 52 55.8
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 9.2e-07 58.5 40 72.5
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 1.6e-06 57.8 53 58.5


User provided reference genes

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