Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 7.6e-135 483.8 237 100.0
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 6.7e-107 391.0 237 81.9
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 1.0e-102 377.1 275 70.5
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 3.8e-94 348.6 232 75.9
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.2e-76 290.4 241 62.2
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 6.1e-76 288.1 238 62.2
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 5.2e-75 285.0 240 61.7
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 7.4e-74 281.2 240 61.2
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 9.7e-74 280.8 239 61.1
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 2.2e-73 279.6 236 61.9
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 3.7e-73 278.9 240 59.6
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 3.7e-73 278.9 240 61.2
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 4.8e-73 278.5 242 59.9
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 4.8e-73 278.5 236 59.7
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 6.3e-73 278.1 233 62.2
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 8.2e-73 277.7 238 62.2
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.1e-72 277.3 240 59.2
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 1.8e-72 276.6 240 60.4
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.8e-72 276.6 240 59.6
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 3.1e-72 275.8 238 59.7
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 7.0e-72 274.6 240 58.8
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 7.0e-72 274.6 238 58.4
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 2.6e-71 272.7 241 61.0
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.6e-71 272.7 237 57.8
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.5e-71 272.3 241 61.4
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 1.7e-70 270.0 237 59.1
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 3.8e-70 268.9 240 60.4
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 3.8e-70 268.9 236 60.6
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 5.0e-70 268.5 234 59.8
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 1.5e-69 266.9 238 58.4
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 1.5e-69 266.9 239 59.4
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 1.5e-69 266.9 241 58.9
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 2.5e-69 266.2 247 57.1
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 5.5e-69 265.0 235 59.1
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 7.2e-69 264.6 227 59.0
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 9.4e-69 264.2 241 59.8
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.6e-68 263.5 239 57.7
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 2.1e-68 263.1 237 57.8
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 2.1e-68 263.1 233 57.5
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.7e-68 262.7 237 58.2
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 4.7e-68 261.9 235 59.1
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 6.1e-68 261.5 234 58.1
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 8.0e-68 261.2 241 57.7
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.4e-67 260.4 236 59.3
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 2.3e-67 259.6 239 58.2
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 5.2e-67 258.5 240 56.2
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 8.8e-67 257.7 235 58.3
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 1.5e-66 256.9 240 57.1
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 5.7e-66 255.0 233 57.5
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 9.7e-66 254.2 242 57.9
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 2.8e-65 252.7 239 57.3
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 2.8e-65 252.7 240 54.6
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 8.3e-65 251.1 239 54.8
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 1.4e-64 250.4 239 56.9
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.8e-64 250.0 240 56.2
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.8e-64 250.0 236 57.6
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 2.4e-64 249.6 238 57.6
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 2.4e-64 249.6 215 60.5
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 5.3e-64 248.4 235 54.9
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 7.0e-64 248.1 236 57.6
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 9.1e-64 247.7 240 54.6
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 2.0e-63 246.5 238 55.9
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 2.7e-63 246.1 237 54.4
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 4.5e-63 245.4 239 54.4
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 4.5e-63 245.4 221 58.8
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 2.2e-62 243.0 220 56.4
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 5.0e-62 241.9 240 54.2
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 5.0e-62 241.9 240 54.2
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 6.5e-62 241.5 237 54.9
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.5e-61 240.4 221 56.6
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.5e-61 240.4 239 55.6
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 1.5e-61 240.4 237 53.2
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 1.5e-61 240.4 222 58.1
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.5e-61 239.6 240 55.4
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 4.2e-61 238.8 239 54.4
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 4.2e-61 238.8 238 50.4
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 5.5e-61 238.4 240 54.6
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 7.2e-61 238.0 238 53.8
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 9.4e-61 237.7 240 53.3
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.6e-60 236.9 240 54.2
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 2.7e-60 236.1 253 49.4
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 3.6e-60 235.7 239 53.6
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 6.1e-60 235.0 238 50.0
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 8.0e-60 234.6 231 56.7
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.4e-59 233.8 221 56.6
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.8e-59 233.4 214 56.5
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 5.2e-59 231.9 241 53.5
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 1.2e-58 230.7 254 52.0
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 1.5e-58 230.3 239 54.0
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 2.0e-58 229.9 239 54.0
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 2.0e-58 229.9 218 56.4
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 4.4e-58 228.8 241 53.5
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 1.7e-57 226.9 242 50.4
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.7e-57 226.9 291 46.7
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-56 224.2 239 52.7
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 2.4e-56 223.0 240 52.1
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.1e-56 222.6 239 53.1
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 6.6e-54 214.9 256 49.2
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 4.4e-50 202.2 217 52.1
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 2.8e-49 199.5 237 47.3
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.8e-48 196.8 215 50.7
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 3.5e-47 192.6 162 60.5
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 3.5e-47 192.6 178 56.7
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.9e-46 189.5 239 46.0
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 5.6e-45 185.3 176 58.0
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.3e-43 179.9 246 45.9
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 9.8e-42 174.5 234 46.2
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 5.4e-40 168.7 272 40.1
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 7.0e-40 168.3 241 41.9
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 4.6e-39 165.6 237 39.7
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 3.0e-38 162.9 236 42.8
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 3.0e-38 162.9 218 39.9
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 6.8e-35 151.8 232 38.4
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 2.0e-34 150.2 135 50.4
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 2.0e-34 150.2 173 45.7
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.4e-34 149.4 239 37.7
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 9.2e-32 141.4 95 66.3
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 9.2e-32 141.4 142 51.4
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 1.6e-31 140.6 241 39.4
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 3.6e-28 129.4 144 51.4
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.3e-27 126.7 95 60.0
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 3.4e-26 122.9 114 56.1
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 3.4e-26 122.9 221 35.7
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 5.1e-22 109.0 104 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 8.6e-22 108.2 140 45.7
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 4.7e-20 102.4 145 44.1
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 2.0e-18 97.1 218 31.7
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 9.9e-18 94.7 101 52.5
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 1.7e-17 94.0 225 31.1
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.0e-14 84.7 87 56.3
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 6.2e-12 75.5 111 38.7
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 3.1e-11 73.2 136 38.2
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 6.9e-11 72.0 96 46.9
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 9.0e-11 71.6 122 42.6
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 5.8e-10 68.9 186 26.3
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 2.2e-09 67.0 107 43.0
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.9e-09 66.6 53 54.7
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.9e-09 65.9 95 43.2
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 2.7e-07 60.1 78 43.6


User provided reference genes

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