Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 5.4e-271 937.9 875 100.0
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 1.4e-181 641.0 876 84.4
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 6.6e-176 622.1 876 79.7
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 1.4e-170 604.4 876 78.9
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 1.7e-115 421.4 874 71.7
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 9.4e-106 389.0 874 70.4
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 3.0e-104 384.0 873 67.4
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 2.0e-100 371.3 870 70.7
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 2.6e-100 370.9 871 68.8
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.4e-98 365.2 885 63.1
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 9.4e-98 362.5 878 68.0
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 1.3e-94 352.1 877 68.1
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 7.0e-93 346.3 871 64.1
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 9.1e-93 345.9 882 66.0
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 2.9e-91 340.9 876 65.4
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 2.5e-90 337.8 878 65.1
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 4.0e-88 330.5 868 68.3
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 6.7e-88 329.7 881 67.0
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 1.5e-87 328.6 879 63.6
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 2.6e-87 327.8 875 68.3
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 9.7e-87 325.9 886 63.1
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 1.1e-85 322.4 874 64.5
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 2.4e-85 321.2 877 64.4
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 2.4e-85 321.2 877 64.4
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 2.4e-85 321.2 868 68.1
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 5.3e-85 320.1 876 66.9
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 2.0e-84 318.2 872 67.8
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 4.5e-84 317.0 879 57.1
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 4.7e-81 307.0 880 66.7
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 8.0e-81 306.2 867 67.7
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.0e-80 305.8 876 64.3
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 4.0e-80 303.9 876 66.7
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 6.8e-80 303.1 877 64.5
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 1.2e-79 302.4 871 63.7
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 2.6e-79 301.2 875 66.5
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 4.4e-79 300.4 875 67.1
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 7.5e-79 299.7 883 66.6
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 5.4e-77 293.5 880 66.1
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 9.1e-77 292.7 876 64.8
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 4.5e-76 290.4 872 66.2
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.0e-75 289.3 872 66.3
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 4.2e-74 283.9 878 61.2
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.2e-73 282.3 872 65.9
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 1.8e-72 278.5 877 65.2
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 2.3e-72 278.1 870 66.7
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 1.2e-71 275.8 869 62.8
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 3.4e-71 274.2 858 62.9
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 2.4e-69 268.1 878 62.3
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 1.6e-68 265.4 892 64.6
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 1.3e-67 262.3 879 64.1
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 1.1e-66 259.2 873 61.5
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 5.6e-66 256.9 871 62.8
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 2.8e-65 254.6 879 63.4
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 8.0e-65 253.1 879 63.4
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 5.2e-64 250.4 878 63.7
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.7e-62 245.4 854 59.3
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 2.9e-62 244.6 814 65.5
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 2.9e-62 244.6 799 67.5
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.1e-61 242.7 876 63.2
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 3.2e-61 241.1 877 63.7
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 5.9e-60 236.9 867 63.7
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 5.9e-60 236.9 879 62.9
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.3e-59 235.7 840 66.8
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.3e-59 235.0 841 66.9
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 5.0e-59 233.8 873 63.0
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 3.3e-58 231.1 879 62.5
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 3.3e-58 231.1 879 62.3
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 8.0e-57 226.5 865 64.5
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 2.3e-56 224.9 441 56.7
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 3.1e-56 224.6 869 63.1
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 3.1e-56 224.6 875 63.3
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 3.1e-56 224.6 876 61.6
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.0e-55 221.9 202 58.4
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 2.9e-54 218.0 371 66.6
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 1.1e-53 216.1 873 62.1
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 2.4e-53 214.9 365 67.7
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 1.2e-52 212.6 883 59.3
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 1.0e-51 209.5 856 60.5
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 1.9e-50 205.3 786 65.8
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 5.6e-50 203.8 883 62.9
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 1.2e-49 202.6 897 52.1
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.2e-49 202.6 367 66.5
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 6.2e-49 200.3 365 66.6
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 8.1e-49 199.9 876 62.4
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 1.8e-48 198.7 818 59.9
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 3.9e-43 181.0 377 60.7
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.9e-42 178.7 868 61.9
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 1.6e-41 175.6 879 59.4
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 1.4e-40 172.6 881 54.7
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 8.9e-40 169.9 378 59.5
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 3.8e-38 164.5 181 47.5
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 3.5e-36 157.9 412 46.8
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.3e-35 156.0 255 37.6
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 6.6e-35 153.7 380 59.2
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.1e-34 152.9 362 59.7
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 7.3e-34 150.2 181 44.8
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 8.9e-32 143.3 382 56.5
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 2.0e-31 142.1 882 34.6
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 1.1e-29 136.3 187 40.1
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 4.8e-25 120.9 152 42.8
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 5.3e-24 117.5 242 36.4
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 1.5e-23 115.9 312 64.7
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 1.9e-21 109.0 396 50.8
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.2e-20 106.3 133 45.1
Gorai.001G138600 Gossypium raimondii HOM05D006556 ORTHO05D025699 9.9e-15 86.7 88 52.3
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.2e-12 79.7 101 47.5
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 4.6e-12 77.8 112 42.9
Gohir.D07G128300 Gossypium hirsutum HOM05D024651 ORTHO05D025699 2.8e-09 68.6 66 54.5
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 1.4e-08 66.2 254 23.6
SEGI_16355 Sequoiadendron giganteum HOM05D004271 ORTHO05D006011 5.3e-08 64.3 169 28.4
Glyma.16G218600 Glycine max HOM05D007145 ORTHO05D008952 6.9e-08 63.9 113 35.4
PGSC0003DMG400008024 Solanum tuberosum HOM05D007145 ORTHO05D008952 9.0e-08 63.5 113 32.7
Gohir.A09G172800 Gossypium hirsutum HOM05D007145 ORTHO05D008952 1.5e-07 62.8 113 33.6
Gohir.D09G168500 Gossypium hirsutum HOM05D007145 ORTHO05D008952 1.5e-07 62.8 113 33.6
Gorai.006G190100 Gossypium raimondii HOM05D007145 ORTHO05D008952 1.5e-07 62.8 113 33.6
Peaxi162Scf00126g00029 Petunia axillaris HOM05D007145 ORTHO05D008952 1.5e-07 62.8 113 31.9
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 2.0e-07 62.4 157 26.8
Cpa.g.sc7.128 Carica papaya HOM05D007145 ORTHO05D008952 3.4e-07 61.6 113 31.9
Cfa020670 Carpinus fangiana HOM05D007145 ORTHO05D008952 3.4e-07 61.6 113 32.7
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 3.4e-07 61.6 142 25.4
Cc04_g09240 Coffea canephora HOM05D007145 ORTHO05D008952 3.4e-07 61.6 113 32.7
ECA233G6190 Erigeron canadensis HOM05D007145 ORTHO05D008952 4.5e-07 61.2 107 32.7
ATR0794G139 Amborella trichopoda HOM05D007155 ORTHO05D003034 5.8e-07 60.8 101 29.7
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 5.8e-07 60.8 134 25.4
Lsat_1_v5_gn_6_5460 Lactuca sativa HOM05D007145 ORTHO05D008952 5.8e-07 60.8 107 32.7
Zm00001eb027640 Zea mays HOM05D006931 ORTHO05D008782 5.8e-07 60.8 140 27.9
Sc04g0003910 Simmondsia chinensis HOM05D007145 ORTHO05D008952 7.6e-07 60.5 113 31.9
Sopen04g032760 Solanum pennellii HOM05D007145 ORTHO05D008952 7.6e-07 60.5 113 31.9
CAN.G371.34 Capsicum annuum HOM05D007145 ORTHO05D008952 1.0e-06 60.1 113 31.9
Solyc04g079150.1 Solanum lycopersicum HOM05D007145 ORTHO05D008952 1.0e-06 60.1 113 31.9
Oeu034452.1 Olea europaea HOM05D007145 ORTHO05D008952 1.3e-06 59.7 113 30.1
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 1.7e-06 59.3 174 26.4
Lj5P134T43 Lonicera japonica HOM05D005362 ORTHO05D006895 1.7e-06 59.3 142 30.3
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 1.7e-06 59.3 134 30.6
arahy.Tifrunner.gnm1.ann1.GSB1YL Arachis hypogaea HOM05D008100 ORTHO05D009715 2.2e-06 58.9 107 43.0
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 2.9e-06 58.5 174 26.4
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 2.9e-06 58.5 170 27.6
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 2.9e-06 58.5 117 35.0
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 3.8e-06 58.2 99 35.4
Duzib205G0762 Durio zibethinus HOM05D007145 ORTHO05D008952 3.8e-06 58.2 113 31.9
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 3.8e-06 58.2 171 24.6
GSVIVG01008125001 Vitis vinifera HOM05D005362 ORTHO05D006895 3.8e-06 58.2 142 31.0
Atru.chr5.2337 Acer truncatum HOM05D007145 ORTHO05D008952 4.9e-06 57.8 113 33.6
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 4.9e-06 57.8 146 29.5
Lalb_Chr24g0398401 Lupinus albus HOM05D007145 ORTHO05D008952 4.9e-06 57.8 113 31.0
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 6.5e-06 57.4 171 25.1
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 6.5e-06 57.4 111 44.1
THA.LOC104800555 Tarenaya hassleriana HOM05D007402 ORTHO05D003673 6.5e-06 57.4 138 37.0
TAR633G2543 Trochodendron aralioides HOM05D007145 ORTHO05D008952 6.5e-06 57.4 113 36.3
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 8.4e-06 57.0 172 35.5
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 8.4e-06 57.0 111 29.7


User provided reference genes

Program Settings