Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 1.0e-63 246.5 120 100.0
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 9.0e-60 233.4 120 94.2
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 8.4e-58 226.9 120 93.3
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 1.9e-57 225.7 120 92.5
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 5.5e-57 224.2 120 91.7
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 3.8e-50 201.4 112 83.0
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 6.5e-50 200.7 112 82.1
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 1.1e-49 199.9 112 82.1
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 1.4e-49 199.5 110 84.5
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 1.4e-49 199.5 110 84.5
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 1.9e-49 199.1 110 84.5
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.9e-49 199.1 110 83.6
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 2.5e-49 198.7 112 81.2
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 2.5e-49 198.7 112 84.8
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 3.2e-49 198.4 112 81.2
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.6e-48 196.1 112 81.2
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.6e-48 196.1 112 79.5
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.1e-48 195.7 110 82.7
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.6e-48 194.9 117 76.9
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 3.6e-48 194.9 112 80.4
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 3.6e-48 194.9 110 80.9
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 4.6e-48 194.5 112 80.4
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 4.6e-48 194.5 112 80.4
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 4.6e-48 194.5 117 76.9
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 6.1e-48 194.1 117 76.1
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 6.1e-48 194.1 112 80.4
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 6.1e-48 194.1 116 76.7
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 7.9e-48 193.7 110 80.0
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 7.9e-48 193.7 112 79.5
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 1.0e-47 193.4 110 80.0
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 1.4e-47 193.0 112 80.4
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 1.4e-47 193.0 113 77.9
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.4e-47 193.0 112 80.4
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 2.3e-47 192.2 112 80.4
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.3e-47 192.2 117 75.2
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 3.0e-47 191.8 110 79.1
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.0e-47 191.8 112 79.5
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 3.0e-47 191.8 112 78.6
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 6.7e-47 190.7 110 80.9
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 6.7e-47 190.7 112 79.5
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 6.7e-47 190.7 110 79.1
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 2.0e-46 189.1 107 82.2
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 2.0e-46 189.1 113 77.0
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 2.5e-46 188.7 112 77.7
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.3e-46 188.3 117 74.4
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 5.7e-46 187.6 113 77.9
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 7.4e-46 187.2 110 78.2
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.3e-45 186.4 109 79.8
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.7e-45 186.0 109 78.9
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.2e-45 185.7 109 78.9
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 2.8e-45 185.3 109 78.0
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.8e-45 185.3 114 77.2
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 4.8e-45 184.5 112 76.8
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 8.2e-45 183.7 109 78.9
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 1.1e-44 183.3 109 78.0
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 1.4e-44 183.0 112 75.9
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 1.4e-44 183.0 112 75.9
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 1.8e-44 182.6 109 77.1
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 2.4e-44 182.2 109 77.1
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 3.1e-44 181.8 109 75.2
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 4.1e-44 181.4 112 76.8
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 4.1e-44 181.4 112 76.8
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 4.1e-44 181.4 112 75.9
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 5.3e-44 181.0 109 76.1
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 5.3e-44 181.0 109 75.2
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 5.3e-44 181.0 109 75.2
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 5.3e-44 181.0 109 78.9
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 6.9e-44 180.6 107 77.6
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 6.9e-44 180.6 109 78.0
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 9.1e-44 180.3 107 76.6
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 9.1e-44 180.3 112 75.0
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.5e-43 179.5 109 74.3
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.5e-43 179.5 109 74.3
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.5e-43 179.5 109 74.3
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.5e-43 179.5 107 76.6
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 1.5e-43 179.5 112 74.1
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 2.0e-43 179.1 112 74.1
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 2.0e-43 179.1 109 76.1
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 7.7e-43 177.2 107 73.8
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 1.3e-42 176.4 113 74.3
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 1.7e-42 176.0 110 74.5
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 2.2e-42 175.6 110 72.7
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 2.9e-42 175.3 109 72.5
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 3.8e-42 174.9 116 69.8
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 5.0e-42 174.5 109 72.5
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 5.0e-42 174.5 109 72.5
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 5.0e-42 174.5 112 73.2
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 6.5e-42 174.1 112 74.1
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.9e-41 172.6 110 74.5
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 3.2e-41 171.8 114 69.3
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 9.4e-41 170.2 130 63.8
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 9.4e-41 170.2 108 75.9
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 3.6e-40 168.3 124 63.7
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 6.1e-40 167.5 108 72.2
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 1.4e-39 166.4 108 70.4
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 2.3e-39 165.6 108 71.3
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 3.0e-39 165.2 136 61.8
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 6.7e-39 164.1 104 73.1
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 1.1e-38 163.3 98 72.4
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 1.5e-38 162.9 108 69.4
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 4.4e-38 161.4 109 69.7
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 9.7e-38 160.2 104 72.1
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 6.3e-37 157.5 94 75.5
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 9.1e-36 153.7 107 67.3
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 2.0e-35 152.5 111 63.1
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 6.5e-34 147.5 80 80.0
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 5.5e-33 144.4 101 68.3
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 9.4e-33 143.7 103 68.9
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 3.6e-32 141.7 127 56.7
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 6.1e-32 141.0 82 74.4
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.3e-31 139.0 79 75.9
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.1e-30 136.7 88 75.0
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 5.7e-30 134.4 84 77.4
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 2.2e-29 132.5 88 69.3
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.2e-29 132.5 172 45.3
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 4.8e-29 131.3 113 54.9
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 5.3e-28 127.9 113 51.3
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 1.0e-26 123.6 75 77.3
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 1.0e-26 123.6 75 77.3
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 6.5e-26 120.9 67 80.6
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 8.5e-26 120.6 70 82.9
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 9.4e-25 117.1 72 72.2
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 8.0e-24 114.0 70 78.6
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 2.3e-23 112.5 72 68.1
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 3.0e-23 112.1 105 48.6
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 9.7e-22 107.1 117 47.0
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 6.3e-21 104.4 55 81.8
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.4e-20 102.4 82 61.0
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 2.2e-18 95.9 61 73.8
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 8.5e-18 94.0 136 34.6
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 5.5e-17 91.3 53 75.5
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 1.4e-15 86.7 52 76.9
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 4.4e-14 81.6 43 81.4
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 3.1e-12 75.5 48 75.0
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 6.6e-10 67.8 60 56.7
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 4.7e-08 61.6 54 51.9
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.4e-07 60.1 38 71.1


User provided reference genes

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