Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027119 Sechium edule HOM05D003423 ORTHO05D003910 1.6e-66 255.8 115 100.0
MELO3C024918.2 Cucumis melo HOM05D003423 ORTHO05D003910 3.2e-38 161.8 113 64.6
CsaV3_7G018340 Cucumis sativus L. HOM05D003423 ORTHO05D003910 3.0e-36 155.2 113 62.8
ClCG09G021170 Citrullus lanatus HOM05D003423 ORTHO05D003910 2.4e-33 145.6 115 59.1
Sed0002105 Sechium edule HOM05D003423 ORTHO05D003910 5.3e-33 144.4 115 61.7
Thecc.07G016500 Theobroma cacao HOM05D003423 ORTHO05D003910 1.9e-19 99.4 109 46.8
GSVIVG01014644001 Vitis vinifera HOM05D003423 ORTHO05D003910 1.9e-19 99.4 115 45.2
Prupe.4G239900 Prunus persica HOM05D003423 ORTHO05D003910 1.3e-18 96.7 94 47.9
RcHm_v2.0_Chr5g0054021 Rosa chinensis HOM05D003423 ORTHO05D003910 2.8e-18 95.5 104 45.2
CiPaw.11G202400 Carya illinoinensis HOM05D003423 ORTHO05D003910 6.3e-18 94.4 83 53.0
MD11G1201700 Malus domestica HOM05D003423 ORTHO05D003910 6.3e-18 94.4 94 45.7
Gorai.013G153900 Gossypium raimondii HOM05D003423 ORTHO05D003910 8.2e-18 94.0 96 46.9
Gohir.D13G137300 Gossypium hirsutum HOM05D003423 ORTHO05D003910 2.4e-17 92.4 96 45.8
Gohir.A04G002900 Gossypium hirsutum HOM05D003423 ORTHO05D003910 3.1e-17 92.0 85 48.2
COL.COLO4_09809 Corchorus olitorius HOM05D003423 ORTHO05D003910 3.4e-16 88.6 76 52.6
Hma1.2p1_0036F.1_g022545 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 4.5e-16 88.2 94 46.8
Hma1.2p1_0036F.1_g022550 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 4.5e-16 88.2 94 46.8
Nitab4.5_0002517g0010 Nicotiana tabacum HOM05D003423 ORTHO05D003910 5.9e-16 87.8 94 45.7
Sopen12g007570 Solanum pennellii HOM05D003423 ORTHO05D003910 5.9e-16 87.8 94 44.7
CiPaw.12G136700 Carya illinoinensis HOM05D003423 ORTHO05D003910 7.7e-16 87.4 87 47.1
Duzib213G0099 Durio zibethinus HOM05D003423 ORTHO05D003910 1.0e-15 87.0 79 51.9
Solyc12g015660.2 Solanum lycopersicum HOM05D003423 ORTHO05D003910 1.0e-15 87.0 94 44.7
CSS0038448 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 1.3e-15 86.7 94 43.6
Gorai.010G207500 Gossypium raimondii HOM05D003423 ORTHO05D003910 1.3e-15 86.7 96 43.8
Manes.03G139900 Manihot esculenta HOM05D003423 ORTHO05D003910 1.3e-15 86.7 94 45.7
FAN21G0447 Fragaria x ananassa HOM05D003423 ORTHO05D003910 5.0e-15 84.7 86 44.2
FAN25G2240 Fragaria x ananassa HOM05D003423 ORTHO05D003910 5.0e-15 84.7 86 44.2
Dinv10321 Davidia involucrata HOM05D003423 ORTHO05D003910 6.5e-15 84.3 78 48.7
DCAR_017083 Daucus carota HOM05D003423 ORTHO05D003910 1.4e-14 83.2 94 42.6
Nitab4.5_0000163g0280 Nicotiana tabacum HOM05D003423 ORTHO05D003910 1.4e-14 83.2 113 38.1
Peaxi162Scf00955g00007 Petunia axillaris HOM05D003423 ORTHO05D003910 1.4e-14 83.2 94 44.7
Potri.011G092900 Populus trichocarpa HOM05D003423 ORTHO05D003910 1.4e-14 83.2 76 50.0
Atru.chr2.3667 Acer truncatum HOM05D003423 ORTHO05D003910 1.9e-14 82.8 94 44.7
Cpa.g.sc12.172 Carica papaya HOM05D003423 ORTHO05D003910 1.9e-14 82.8 104 40.4
Haze_09806 Corylus avellana HOM05D003423 ORTHO05D003910 2.5e-14 82.4 117 41.9
FAN11G0659 Fragaria x ananassa HOM05D003423 ORTHO05D003910 2.5e-14 82.4 86 44.2
Actinidia37163 Actinidia chinensis HOM05D003423 ORTHO05D003910 7.2e-14 80.9 92 44.6
CSS0034763 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 1.2e-13 80.1 94 42.6
FvH4_3g29470 Fragaria vesca HOM05D003423 ORTHO05D003910 1.2e-13 80.1 86 43.0
CANSAT11G1165 Cannabis sativa HOM05D003423 ORTHO05D003910 2.1e-13 79.3 78 47.4
QL08p004807 Quercus lobata HOM05D003423 ORTHO05D003910 2.1e-13 79.3 115 39.1
TWI39G0701 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 2.1e-13 79.3 93 41.9
MSTRG.14479 Avicennia marina HOM05D003423 ORTHO05D003910 3.6e-13 78.6 73 49.3
AUR62036422 Chenopodium quinoa HOM05D003423 ORTHO05D003910 3.6e-13 78.6 104 40.4
AUR62036428 Chenopodium quinoa HOM05D003423 ORTHO05D003910 3.6e-13 78.6 104 40.4
Oeu041432.1 Olea europaea HOM05D003423 ORTHO05D003910 3.6e-13 78.6 75 48.0
PGSC0003DMG400029797 Solanum tuberosum HOM05D003423 ORTHO05D003910 4.6e-13 78.2 126 35.7
TWI38G0990 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 4.6e-13 78.2 85 44.7
VMungo0540G0232 Vigna mungo HOM05D003423 ORTHO05D003910 1.8e-12 76.3 83 45.8
Rhsim04G0013800 Rhododendron simsii HOM05D003423 ORTHO05D003910 3.0e-12 75.5 107 38.3
Ca_12436_v3 Cicer arietinum L. HOM05D003423 ORTHO05D003910 5.1e-12 74.7 104 40.4
Manes.15G061600 Manihot esculenta HOM05D003423 ORTHO05D003910 5.1e-12 74.7 86 43.0
vmacro09657 Vaccinium macrocarpon HOM05D003423 ORTHO05D003910 6.7e-12 74.3 106 37.7
Lj1A888G39 Lonicera japonica HOM05D003423 ORTHO05D003910 8.8e-12 73.9 75 46.7
THA.LOC104810286 Tarenaya hassleriana HOM05D003423 ORTHO05D003910 1.5e-11 73.2 94 42.6
TAR624G0752 Trochodendron aralioides HOM05D003423 ORTHO05D003910 1.5e-11 73.2 106 38.7
arahy.Tifrunner.gnm1.ann1.HUB5JH Arachis hypogaea HOM05D003423 ORTHO05D003910 2.5e-11 72.4 94 38.3
Phvul.006G055600 Phaseolus vulgaris HOM05D003423 ORTHO05D003910 3.3e-11 72.0 83 44.6
TAR626G1285 Trochodendron aralioides HOM05D003423 ORTHO05D003910 3.3e-11 72.0 105 38.1
Zm00001eb374280 Zea mays HOM05D003423 ORTHO05D003910 4.3e-11 71.6 103 38.8
Aa31LG10G260 Aethionema arabicum HOM05D003423 ORTHO05D003910 5.7e-11 71.2 78 43.6
AL1G64060 Arabidopsis lyrata HOM05D003423 ORTHO05D003910 5.7e-11 71.2 101 38.6
Thhalv10011589m.g Eutrema salsugineum HOM05D003423 ORTHO05D003910 5.7e-11 71.2 78 44.9
AT1G55915 Arabidopsis thaliana HOM05D003423 ORTHO05D003910 7.4e-11 70.9 101 38.6
arahy.Tifrunner.gnm1.ann1.FCEI8S Arachis hypogaea HOM05D003423 ORTHO05D003910 7.4e-11 70.9 94 38.3
BraA08t32074Z Brassica rapa HOM05D003423 ORTHO05D003910 9.7e-11 70.5 78 44.9
BraA08t32113Z Brassica rapa HOM05D003423 ORTHO05D003910 9.7e-11 70.5 78 44.9
Lalb_Chr15g0081991 Lupinus albus HOM05D003423 ORTHO05D003910 9.7e-11 70.5 101 38.6
C03p93330 Brassica napus HOM05D003423 ORTHO05D003910 1.3e-10 70.1 76 46.1
Glyma.18G078800 Glycine max HOM05D003423 ORTHO05D003910 1.3e-10 70.1 81 43.2
EL10Ac4g07604 Beta vulgaris HOM05D003423 ORTHO05D003910 1.7e-10 69.7 103 35.9
A08p00550 Brassica napus HOM05D003423 ORTHO05D003910 1.7e-10 69.7 78 44.9
ECA236G2484 Erigeron canadensis HOM05D003423 ORTHO05D003910 1.7e-10 69.7 76 47.4
arahy.Tifrunner.gnm1.ann1.08VBYE Arachis hypogaea HOM05D003423 ORTHO05D003910 2.2e-10 69.3 94 37.2
BcaC01g01534 Brassica carinata HOM05D003423 ORTHO05D003910 2.2e-10 69.3 76 44.7
C03p92860 Brassica napus HOM05D003423 ORTHO05D003910 2.2e-10 69.3 76 44.7
BolC3t21592H Brassica oleracea HOM05D003423 ORTHO05D003910 2.2e-10 69.3 76 44.7
BolC3t21631H Brassica oleracea HOM05D003423 ORTHO05D003910 2.2e-10 69.3 78 43.6
Nn1g07481 Nelumbo nucifera HOM05D003423 ORTHO05D003910 2.2e-10 69.3 105 38.1
Gohir.A04G133100 Gossypium hirsutum HOM05D003423 ORTHO05D003910 2.8e-10 68.9 98 39.8
PSO782G1032 Papaver somniferum HOM05D003423 ORTHO05D003910 2.8e-10 68.9 72 45.8
Actinidia21857 Actinidia chinensis HOM05D003423 ORTHO05D003910 3.7e-10 68.6 76 42.1
HanXRQChr11g0333391 Helianthus annuus HOM05D003423 ORTHO05D003910 3.7e-10 68.6 78 44.9
Sp1g41520 Schrenkiella parvula HOM05D003423 ORTHO05D003910 3.7e-10 68.6 78 43.6
Lj6g0015704 Lotus japonicus HOM05D003423 ORTHO05D003910 8.2e-10 67.4 107 34.6
Psat7g121520 Pisum sativum HOM05D003423 ORTHO05D003910 8.2e-10 67.4 103 35.0
AUR62017070 Chenopodium quinoa HOM05D003423 ORTHO05D003910 1.8e-09 66.2 104 36.5
PSO063G5220 Papaver somniferum HOM05D003423 ORTHO05D003910 1.8e-09 66.2 72 44.4
TPR.G30741 Trifolium pratense HOM05D003423 ORTHO05D003910 6.9e-09 64.3 82 41.5
CARHR045630 Cardamine hirsuta HOM05D003423 ORTHO05D003910 9.1e-09 63.9 78 41.0
Migut.H01764 Erythranthe guttata HOM05D003423 ORTHO05D003910 9.1e-09 63.9 94 36.2
HPP92_017868 Vanilla planifolia HOM05D003423 ORTHO05D003910 9.1e-09 63.9 95 38.9
Lsat_1_v5_gn_1_26441 Lactuca sativa HOM05D003423 ORTHO05D003910 1.2e-08 63.5 103 37.9
Eucgr.F02068 Eucalyptus grandis HOM05D003423 ORTHO05D003910 2.0e-08 62.8 92 39.1
MBI16_g46430_MAGBIO Magnolia biondii HOM05D003423 ORTHO05D003910 2.6e-08 62.4 94 37.2
CDE04G0040 Ceratophyllum demersum HOM05D003423 ORTHO05D003910 3.4e-08 62.0 76 39.5
Os06g0191200 Oryza sativa ssp. japonica HOM05D003423 ORTHO05D003910 5.9e-08 61.2 80 38.8
Psat5g170040 Pisum sativum HOM05D003423 ORTHO05D003910 7.7e-08 60.8 70 42.9
BcaC06g31883 Brassica carinata HOM05D003423 ORTHO05D003910 1.0e-07 60.5 78 39.7
ATR0580G345 Amborella trichopoda HOM05D003423 ORTHO05D003910 1.3e-07 60.1 78 39.7
CAN.G790.42 Capsicum annuum HOM05D003423 ORTHO05D003910 1.3e-07 60.1 73 43.8
Medtr3g058580 Medicago truncatula HOM05D003423 ORTHO05D003910 5.0e-07 58.2 82 39.0
Aqoxy6G02866 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 8.5e-07 57.4 72 41.7
Nitab4.5_0001691g0030 Nicotiana tabacum HOM05D003423 ORTHO05D003910 8.5e-07 57.4 76 38.2
vmacro18704 Vaccinium macrocarpon HOM05D003423 ORTHO05D003910 8.5e-07 57.4 110 32.7
C04p33240 Brassica napus HOM05D003423 ORTHO05D003910 1.1e-06 57.0 68 38.2
Sc16g0007990 Simmondsia chinensis HOM05D003423 ORTHO05D003910 1.1e-06 57.0 78 39.7
VMungo1080G0425 Vigna mungo HOM05D003423 ORTHO05D003910 1.1e-06 57.0 103 35.0
Cc05_g14820 Coffea canephora HOM05D003423 ORTHO05D003910 1.4e-06 56.6 36 66.7
Gohir.A13G106200 Gossypium hirsutum HOM05D003423 ORTHO05D003910 1.4e-06 56.6 59 45.8
Hund01908 Selenicereus undatus HOM05D003423 ORTHO05D003910 1.4e-06 56.6 38 57.9
HPP92_018337 Vanilla planifolia HOM05D003423 ORTHO05D003910 1.9e-06 56.2 75 38.7
Actinidia33816 Actinidia chinensis HOM05D003423 ORTHO05D003910 2.5e-06 55.8 76 39.5
Aqoxy102s004 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 2.5e-06 55.8 72 41.7
Aqoxy2G03521 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 2.5e-06 55.8 72 41.7
Hund05673 Selenicereus undatus HOM05D003423 ORTHO05D003910 2.5e-06 55.8 92 34.8
Ah.06g181290 Amaranthus hybridus HOM05D003423 ORTHO05D003910 3.2e-06 55.5 78 38.5
SHI26527 Sapria himalayana HOM05D003423 ORTHO05D003910 3.2e-06 55.5 88 35.2


User provided reference genes

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