Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 1.2e-46 189.5 96 100.0
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 4.9e-32 141.0 96 76.0
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 1.1e-28 129.8 98 71.4
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 4.3e-28 127.9 98 71.4
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 1.5e-17 92.8 96 57.3
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 3.4e-17 91.7 96 55.2
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 7.6e-17 90.5 97 52.6
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 1.7e-16 89.4 97 55.7
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 4.9e-16 87.8 94 55.3
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.1e-15 86.7 94 54.3
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.4e-15 86.3 97 54.6
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 5.4e-15 84.3 99 53.5
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 7.1e-15 84.0 97 53.6
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 1.6e-14 82.8 94 53.2
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 2.7e-14 82.0 98 53.1
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 7.8e-14 80.5 94 50.0
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 7.8e-14 80.5 95 51.6
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.0e-13 80.1 98 46.9
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 2.3e-13 79.0 96 47.9
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 2.3e-13 79.0 93 51.6
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 2.3e-13 79.0 100 49.0
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 3.0e-13 78.6 95 51.6
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 3.9e-13 78.2 94 52.1
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 3.9e-13 78.2 94 51.1
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 3.9e-13 78.2 99 48.5
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 3.9e-13 78.2 66 60.6
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 6.6e-13 77.4 93 51.6
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 6.6e-13 77.4 94 48.9
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 8.6e-13 77.0 95 50.5
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 8.6e-13 77.0 95 49.5
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 1.1e-12 76.6 94 51.1
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 1.1e-12 76.6 94 50.0
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 2.5e-12 75.5 94 47.9
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 2.5e-12 75.5 100 51.0
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 3.3e-12 75.1 97 50.5
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 3.3e-12 75.1 97 50.5
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 9.6e-12 73.6 93 49.5
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 9.6e-12 73.6 93 49.5
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 1.6e-11 72.8 100 47.0
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 1.6e-11 72.8 95 46.3
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 3.6e-11 71.6 93 49.5
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 3.6e-11 71.6 93 47.3
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 3.6e-11 71.6 102 48.0
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 6.2e-11 70.9 94 47.9
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 6.2e-11 70.9 50 68.0
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 8.1e-11 70.5 50 68.0
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 1.4e-10 69.7 93 48.4
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 1.8e-10 69.3 97 45.4
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 2.4e-10 68.9 50 70.0
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 2.4e-10 68.9 94 46.8
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 3.1e-10 68.6 93 46.2
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 4.0e-10 68.2 50 68.0
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 8.9e-10 67.0 96 40.6
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 1.2e-09 66.6 102 39.2
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 1.2e-09 66.6 95 46.3
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 1.2e-09 66.6 84 48.8
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 1.5e-09 66.2 97 47.4
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 4.4e-09 64.7 93 50.5
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 5.8e-09 64.3 96 40.6
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 5.8e-09 64.3 86 48.8
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 7.6e-09 63.9 59 55.9
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 2.2e-08 62.4 45 68.9
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 6.4e-08 60.8 47 57.4
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 8.4e-08 60.5 91 42.9
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 1.1e-07 60.1 45 64.4
Aa31sc146G10 Aethionema arabicum HOM05D010996 ORTHO05D009840 1.9e-07 59.3 48 60.4
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 1.9e-07 59.3 108 37.0
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 2.4e-07 58.9 49 57.1
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 3.2e-07 58.5 97 40.2
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 3.2e-07 58.5 97 40.2
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 5.4e-07 57.8 96 39.6
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 7.1e-07 57.4 64 46.9
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 1.2e-06 56.6 97 42.3
VMungo1309G1730 Vigna mungo HOM05D009255 ORTHO05D011239 1.6e-06 56.2 67 46.3
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 2.1e-06 55.8 100 37.0
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 2.7e-06 55.5 94 41.5
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 4.6e-06 54.7 94 45.7
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 4.6e-06 54.7 94 45.7
Phvul.009G134100 Phaseolus vulgaris HOM05D009255 ORTHO05D011239 7.8e-06 53.9 70 41.4
TPR.G6325 Trifolium pratense HOM05D009255 ORTHO05D011239 7.8e-06 53.9 69 37.7


User provided reference genes

Program Settings