Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 1.8e-195 685.6 325 100.0
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 6.6e-182 640.6 325 92.0
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 2.1e-180 635.6 325 91.4
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 6.2e-180 634.0 325 91.7
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 2.4e-179 632.1 326 91.1
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.6e-167 592.8 317 86.4
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.6e-167 592.8 322 86.6
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 2.1e-167 592.4 315 87.9
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.7e-167 592.0 321 84.7
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 3.5e-167 591.7 308 88.0
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 4.6e-167 591.3 325 84.0
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 4.6e-167 591.3 322 86.0
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 1.3e-166 589.7 318 87.1
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 1.8e-166 589.3 322 85.4
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 2.3e-166 589.0 324 84.3
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.3e-166 589.0 322 85.7
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 3.0e-166 588.6 322 85.1
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 6.7e-166 587.4 317 85.5
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 5.6e-165 584.3 327 84.1
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.4e-165 583.9 323 85.1
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 1.3e-164 583.2 322 84.5
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.6e-164 582.8 310 88.1
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.6e-164 582.8 323 85.1
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 1.6e-164 582.8 325 82.5
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 2.1e-164 582.4 323 85.1
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 2.8e-164 582.0 324 83.3
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 3.7e-164 581.6 325 82.8
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 6.2e-164 580.9 318 85.2
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.1e-163 580.1 320 83.4
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.1e-163 580.1 321 83.2
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 1.4e-163 579.7 319 82.4
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.4e-163 579.7 322 84.2
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.4e-163 579.7 320 84.1
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 1.4e-163 579.7 318 84.6
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.4e-163 578.9 313 85.6
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 2.4e-163 578.9 318 84.6
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 4.0e-163 578.2 325 83.1
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 4.0e-163 578.2 315 84.4
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 5.3e-163 577.8 314 86.3
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 5.3e-163 577.8 320 83.8
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 6.9e-163 577.4 321 83.8
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 9.0e-163 577.0 318 84.6
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 2.0e-162 575.9 311 84.9
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 3.4e-162 575.1 316 83.9
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 4.5e-162 574.7 311 84.9
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 4.5e-162 574.7 308 85.4
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 5.8e-162 574.3 311 86.5
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 5.8e-162 574.3 318 85.8
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.8e-162 574.3 325 82.8
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 7.6e-162 573.9 308 84.4
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 7.6e-162 573.9 316 82.6
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.3e-161 573.2 317 83.9
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 1.3e-161 573.2 314 84.7
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 1.3e-161 573.2 321 83.8
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 1.3e-161 573.2 322 83.5
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 2.2e-161 572.4 317 83.9
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 2.9e-161 572.0 314 84.7
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.9e-161 572.0 326 81.6
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 3.8e-161 571.6 317 83.9
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.8e-161 571.6 317 83.9
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 3.8e-161 571.6 327 82.6
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.5e-161 570.9 314 83.4
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 1.4e-160 569.7 304 88.2
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 1.4e-160 569.7 326 80.4
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 1.4e-160 569.7 326 80.4
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 3.2e-160 568.5 315 83.8
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 4.2e-160 568.2 317 83.3
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 4.2e-160 568.2 316 82.6
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 5.5e-160 567.8 317 81.7
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 7.1e-160 567.4 311 83.9
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 7.1e-160 567.4 311 83.9
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 7.1e-160 567.4 318 83.0
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 3.5e-159 565.1 321 81.3
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 6.0e-159 564.3 310 83.9
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 7.9e-159 563.9 317 83.0
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 7.9e-159 563.9 313 83.4
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.3e-158 563.1 314 83.1
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.8e-158 562.8 327 80.1
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 1.8e-158 562.8 325 80.3
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 1.8e-158 562.8 319 82.1
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 2.3e-158 562.4 307 83.7
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 3.0e-158 562.0 383 70.8
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 3.9e-158 561.6 320 81.6
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 1.5e-157 559.7 315 83.8
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 1.9e-157 559.3 314 81.2
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 3.3e-157 558.5 311 82.6
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 3.3e-157 558.5 311 82.6
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 3.3e-157 558.5 311 82.6
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 7.4e-157 557.4 317 82.0
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.6e-156 556.2 317 81.7
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 6.2e-156 554.3 317 81.7
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 1.4e-155 553.1 316 80.7
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.8e-155 552.7 317 80.8
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 1.8e-155 552.7 314 81.2
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 9.0e-155 550.4 311 81.4
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 9.0e-155 550.4 311 81.4
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 1.2e-154 550.1 317 80.8
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 3.4e-154 548.5 325 78.2
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 1.0e-153 547.0 320 79.4
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 1.3e-153 546.6 319 79.0
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 2.9e-153 545.4 320 79.1
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 6.5e-153 544.3 324 76.2
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 1.2e-151 540.0 320 78.1
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 1.6e-151 539.7 332 75.9
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 1.2e-146 523.5 296 80.7
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 3.7e-140 501.9 307 74.6
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 4.8e-140 501.5 304 78.3
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 6.3e-140 501.1 294 77.2
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 1.4e-139 500.0 310 73.9
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 6.9e-139 497.7 308 74.4
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 1.7e-137 493.0 263 85.6
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 2.9e-137 492.3 279 80.3
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 1.8e-134 483.0 279 81.0
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 4.1e-131 471.9 312 69.6
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 1.7e-129 466.5 307 68.7
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.1e-128 463.8 310 68.1
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.1e-128 463.8 310 68.1
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 9.4e-128 460.7 338 66.6
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 4.7e-127 458.4 309 67.6
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 5.3e-123 444.9 250 79.6
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.8e-115 419.9 311 60.5
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 5.2e-110 401.7 225 83.6
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 2.8e-103 379.4 321 56.4
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 3.5e-98 362.5 246 68.7
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 1.9e-96 356.7 215 76.3
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 7.8e-90 334.7 324 50.3
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.0e-81 306.2 345 44.6
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 1.4e-70 270.8 360 40.0
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.3e-57 227.6 123 83.7
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 2.5e-32 143.7 82 84.1
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 7.7e-29 132.1 89 71.9
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.3e-20 104.8 80 67.5
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 2.7e-18 97.1 66 68.2
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 3.1e-14 83.6 64 65.6
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 5.0e-12 76.3 45 73.3
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 6.5e-12 75.9 41 80.5
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 8.5e-12 75.5 42 73.8
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.1e-06 58.5 42 59.5


User provided reference genes

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