Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027044 Sechium edule HOM05D008579 ORTHO05D010245 4.3e-41 171.0 94 100.0
Sed0026635 Sechium edule HOM05D008579 ORTHO05D010245 2.1e-27 125.6 79 81.0
ClCG05G023140 Citrullus lanatus HOM05D008579 ORTHO05D010245 4.8e-24 114.4 80 75.0
CsaV3_5G033860 Cucumis sativus L. HOM05D008579 ORTHO05D010245 3.0e-18 95.1 70 68.6
MELO3C012204.2 Cucumis melo HOM05D008579 ORTHO05D010245 3.3e-17 91.7 71 69.0
Prupe.1G303500 Prunus persica HOM05D008579 ORTHO05D010245 1.1e-12 76.6 82 52.4
Ciclev10033191m.g Citrus clementina HOM05D008579 ORTHO05D010245 3.2e-12 75.1 89 47.2
Gohir.A12G172600 Gossypium hirsutum HOM05D008579 ORTHO05D010245 5.5e-12 74.3 74 55.4
Gohir.D12G175100 Gossypium hirsutum HOM05D008579 ORTHO05D010245 5.5e-12 74.3 74 55.4
Glyma.10G205400 Glycine max HOM05D008579 ORTHO05D010245 9.4e-12 73.6 80 52.5
Nn4g23678 Nelumbo nucifera HOM05D008579 ORTHO05D010245 9.4e-12 73.6 79 48.1
Gorai.008G187700 Gossypium raimondii HOM05D008579 ORTHO05D010245 1.2e-11 73.2 76 51.3
RcHm_v2.0_Chr4g0436131 Rosa chinensis HOM05D008579 ORTHO05D010245 2.1e-11 72.4 77 48.1
Phvul.007G101400 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 3.6e-11 71.6 80 50.0
Eucgr.G02368 Eucalyptus grandis HOM05D008579 ORTHO05D010245 7.9e-11 70.5 80 48.8
Hma1.2p1_0605F.1_g187880 Hydrangea macrophylla HOM05D008579 ORTHO05D010245 2.3e-10 68.9 76 46.1
Glyma.20G185000 Glycine max HOM05D008579 ORTHO05D010245 3.9e-10 68.2 80 47.5
Thecc.02G363200 Theobroma cacao HOM05D008579 ORTHO05D010245 3.9e-10 68.2 68 51.5
Lj3g0023630 Lotus japonicus HOM05D008579 ORTHO05D010245 5.1e-10 67.8 78 48.7
Lj5g0012204 Lotus japonicus HOM05D008579 ORTHO05D010245 5.1e-10 67.8 78 48.7
Haze_17414 Corylus avellana HOM05D008579 ORTHO05D010245 6.7e-10 67.4 74 45.9
Potri.008G114600 Populus trichocarpa HOM05D008579 ORTHO05D010245 1.1e-09 66.6 69 49.3
Potri.010G131500 Populus trichocarpa HOM05D008579 ORTHO05D010245 4.3e-09 64.7 69 49.3
QL01p000876 Quercus lobata HOM05D008579 ORTHO05D010245 5.7e-09 64.3 75 44.0
Glyma.01G090400 Glycine max HOM05D008579 ORTHO05D010245 1.3e-08 63.2 78 44.9
Manes.06G074200 Manihot esculenta HOM05D008579 ORTHO05D010245 1.7e-08 62.8 91 45.1
ClCG01G005780 Citrullus lanatus HOM05D008579 ORTHO05D010245 3.7e-08 61.6 78 46.2
Glyma.02G131300 Glycine max HOM05D008579 ORTHO05D010245 4.8e-08 61.2 78 43.6
Nn3g17676 Nelumbo nucifera HOM05D008579 ORTHO05D010245 8.2e-08 60.5 68 42.6
Peaxi162Scf00367g00073 Petunia axillaris HOM05D022312 ORTHO05D014564 8.2e-08 60.5 79 41.8
COL.COLO4_07854 Corchorus olitorius HOM05D008579 ORTHO05D010245 1.4e-07 59.7 53 52.8
Lj2g0027990 Lotus japonicus HOM05D008579 ORTHO05D010245 4.1e-07 58.2 80 41.2
Sed0005216 Sechium edule HOM05D008579 ORTHO05D010245 5.3e-07 57.8 39 66.7
Lalb_Chr02g0151861 Lupinus albus HOM05D008579 ORTHO05D010245 6.9e-07 57.4 80 37.5
Phvul.003G025100 Phaseolus vulgaris HOM05D008579 ORTHO05D010245 9.1e-07 57.0 79 44.3
Migut.E00288 Erythranthe guttata HOM05D022312 ORTHO05D045303 2.0e-06 55.8 71 46.5
Lalb_Chr04g0255041 Lupinus albus HOM05D008579 ORTHO05D010245 3.4e-06 55.1 83 43.4
Manes.14G096100 Manihot esculenta HOM05D008579 ORTHO05D010245 4.5e-06 54.7 32 71.9
Thhalv10019748m.g Eutrema salsugineum HOM05D010485 ORTHO05D010245 5.9e-06 54.3 73 42.5
Lalb_Chr17g0341821 Lupinus albus HOM05D008579 ORTHO05D010245 5.9e-06 54.3 94 37.2
BcaC03g17283 Brassica carinata HOM05D010662 ORTHO05D012734 7.7e-06 53.9 75 36.0
C02p52300 Brassica napus HOM05D010662 ORTHO05D012734 7.7e-06 53.9 75 36.0
BolC2t11312H Brassica oleracea HOM05D010662 ORTHO05D012734 7.7e-06 53.9 75 36.0
MELO3C005351.2 Cucumis melo HOM05D065573 ORTHO05D010245 7.7e-06 53.9 94 43.6


User provided reference genes

Program Settings