Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026987 Sechium edule HOM05D004063 ORTHO05D005326 1.8e-96 355.9 176 100.0
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 8.2e-94 347.1 176 96.6
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 5.3e-93 344.4 174 97.1
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 1.2e-92 343.2 174 96.6
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 7.2e-90 334.0 174 92.5
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 9.4e-90 333.6 174 94.3
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 1.6e-89 332.8 174 94.3
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 2.7e-89 332.0 174 93.1
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 2.7e-89 332.0 174 93.1
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 3.6e-89 331.6 174 93.7
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 3.6e-89 331.6 174 93.1
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 3.6e-89 331.6 174 93.7
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 4.7e-89 331.3 174 93.7
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 4.7e-89 331.3 174 94.3
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 4.7e-89 331.3 174 92.5
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 6.1e-89 330.9 174 93.1
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 6.1e-89 330.9 174 92.5
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.1e-89 330.9 174 92.5
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 1.0e-88 330.1 174 92.5
Dinv31945 Davidia involucrata HOM05D004063 ORTHO05D005326 1.4e-88 329.7 176 90.3
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 1.4e-88 329.7 174 93.7
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 2.3e-88 328.9 174 92.5
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 2.3e-88 328.9 174 93.7
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 3.0e-88 328.6 174 92.5
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 3.0e-88 328.6 174 92.5
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 3.9e-88 328.2 174 91.4
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 3.9e-88 328.2 174 92.0
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 3.9e-88 328.2 174 93.7
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 3.9e-88 328.2 174 92.5
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 5.2e-88 327.8 174 92.5
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 5.2e-88 327.8 174 92.0
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 5.2e-88 327.8 174 92.5
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 5.2e-88 327.8 173 92.5
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 6.7e-88 327.4 174 91.4
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 6.7e-88 327.4 174 92.0
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 6.7e-88 327.4 174 91.4
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 6.7e-88 327.4 174 91.4
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 6.7e-88 327.4 174 91.4
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 8.8e-88 327.0 174 91.4
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 8.8e-88 327.0 174 92.0
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 8.8e-88 327.0 174 91.4
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 8.8e-88 327.0 174 91.4
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 8.8e-88 327.0 174 91.4
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 8.8e-88 327.0 174 92.0
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.1e-87 326.6 174 91.4
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 1.1e-87 326.6 174 91.4
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 1.5e-87 326.2 174 92.5
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 1.5e-87 326.2 174 92.0
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 1.5e-87 326.2 174 90.8
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 2.0e-87 325.9 174 92.0
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 2.0e-87 325.9 174 91.4
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 2.0e-87 325.9 174 90.8
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 2.0e-87 325.9 174 92.0
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 2.6e-87 325.5 174 91.4
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 2.6e-87 325.5 174 91.4
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 2.6e-87 325.5 174 91.4
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 2.6e-87 325.5 174 91.4
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 2.6e-87 325.5 174 91.4
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 2.6e-87 325.5 174 91.4
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 2.6e-87 325.5 174 92.0
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 2.6e-87 325.5 174 92.0
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.3e-87 325.1 174 92.0
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 3.3e-87 325.1 174 91.4
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 3.3e-87 325.1 174 90.8
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 4.4e-87 324.7 174 90.2
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 4.4e-87 324.7 173 91.9
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 5.7e-87 324.3 169 92.9
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 5.7e-87 324.3 174 90.8
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 5.7e-87 324.3 174 91.4
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 5.7e-87 324.3 174 92.0
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 7.4e-87 323.9 174 90.8
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 7.4e-87 323.9 174 90.8
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 7.4e-87 323.9 174 90.8
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 7.4e-87 323.9 174 89.7
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 7.4e-87 323.9 174 90.2
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 9.7e-87 323.6 174 90.8
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 9.7e-87 323.6 174 91.4
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 9.7e-87 323.6 174 90.8
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 9.7e-87 323.6 174 90.8
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 1.3e-86 323.2 174 90.8
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 1.3e-86 323.2 174 90.8
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.3e-86 323.2 174 90.2
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.3e-86 323.2 174 90.2
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 1.3e-86 323.2 174 90.2
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 1.7e-86 322.8 174 90.8
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 2.2e-86 322.4 174 90.2
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 2.2e-86 322.4 174 90.8
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 2.2e-86 322.4 174 90.8
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 2.2e-86 322.4 174 90.8
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 2.8e-86 322.0 174 90.2
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 2.8e-86 322.0 174 90.2
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 2.8e-86 322.0 174 91.4
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 4.8e-86 321.2 174 90.2
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 4.8e-86 321.2 174 89.7
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 6.3e-86 320.9 174 89.1
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 6.3e-86 320.9 174 90.2
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 8.2e-86 320.5 174 90.8
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 1.8e-85 319.3 174 87.9
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 1.8e-85 319.3 174 88.5
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 3.1e-85 318.5 172 90.7
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 3.1e-85 318.5 179 88.3
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 4.1e-85 318.2 174 89.1
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 5.3e-85 317.8 174 87.9
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 5.3e-85 317.8 199 80.4
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 1.2e-84 316.6 174 89.1
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 1.6e-84 316.2 170 90.6
arahy.Tifrunner.gnm1.ann1.T0MTDZ Arachis hypogaea HOM05D004063 ORTHO05D005326 3.5e-84 315.1 172 89.0
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 1.0e-83 313.5 206 77.7
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 6.5e-83 310.8 175 88.0
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 1.9e-82 309.3 174 86.2
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 6.1e-81 304.3 189 81.0
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 4.0e-80 301.6 172 85.5
BraA06t24763Z Brassica rapa HOM05D004063 ORTHO05D005326 1.3e-78 296.6 175 84.0
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 1.7e-78 296.2 174 86.8
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.4e-77 293.1 161 86.3
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 1.4e-77 293.1 174 83.9
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 5.3e-77 291.2 174 82.8
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 7.0e-77 290.8 156 89.7
A06p16570 Brassica napus HOM05D004063 ORTHO05D005326 1.2e-76 290.0 174 84.5
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 5.0e-75 284.6 174 78.2
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 5.5e-74 281.2 174 77.6
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 9.4e-74 280.4 174 77.6
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 2.1e-73 279.3 174 77.0
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 4.7e-73 278.1 275 57.8
CBR_g19920 Chara braunii HOM05D004063 ORTHO05D005326 2.6e-71 272.3 172 74.4
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 1.7e-70 269.6 140 92.9
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 1.7e-70 269.6 140 92.9
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 4.1e-69 265.0 174 75.9
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 4.5e-68 261.5 174 76.4
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.0e-67 258.1 140 88.6
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 1.1e-66 256.9 172 73.3
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 1.0e-64 250.4 150 80.7
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 2.0e-63 246.1 140 86.4
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 3.7e-62 241.9 173 69.9
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 3.1e-61 238.8 170 68.2
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 2.9e-54 215.7 170 60.6
Cpa.g.c43717 Carica papaya HOM05D004063 ORTHO05D005326 3.7e-54 215.3 111 93.7
Manes.12G151825 Manihot esculenta HOM05D004063 ORTHO05D005326 1.4e-53 213.4 117 88.9
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 4.1e-53 211.8 174 65.5
MBI08_g41353_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 7.0e-53 211.1 145 75.9
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 1.6e-52 209.9 165 61.8
Psat5g286640 Pisum sativum HOM05D004063 ORTHO05D005326 7.3e-50 201.1 101 92.1
Sc15g0004420 Simmondsia chinensis HOM05D004063 ORTHO05D005326 1.6e-49 199.9 101 91.1
arahy.Tifrunner.gnm1.ann1.Z2LGXF Arachis hypogaea HOM05D004063 ORTHO05D013367 2.3e-48 196.1 131 74.0
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.4e-46 188.0 173 63.0
Rhsim06G0007000 Rhododendron simsii HOM05D004063 ORTHO05D005326 7.0e-45 184.5 185 56.8
arahy.Tifrunner.gnm1.ann1.ND9UIP Arachis hypogaea HOM05D004063 ORTHO05D013367 8.6e-43 177.6 131 70.2
arahy.Tifrunner.gnm1.ann1.SDYE8W Arachis hypogaea HOM05D004063 ORTHO05D013367 8.6e-43 177.6 131 70.2
Cfa014082 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.9e-42 176.4 90 90.0
arahy.Tifrunner.gnm1.ann1.RK3M4K Arachis hypogaea HOM05D004063 ORTHO05D001221 2.5e-42 176.0 131 69.5
SalBow5G3904 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.4e-40 170.2 92 89.1
vmacro04405 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 5.8e-39 164.9 96 82.3
arahy.Tifrunner.gnm1.ann1.T1UNZ1 Arachis hypogaea HOM05D004063 ORTHO05D005326 1.2e-36 157.1 127 67.7
arahy.Tifrunner.gnm1.ann1.N6YLHX Arachis hypogaea HOM05D004063 ORTHO05D005326 3.3e-34 149.1 90 77.8
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.0e-27 127.5 149 53.0
Cc07_g21180 Coffea canephora HOM05D004063 ORTHO05D005326 1.3e-27 127.1 73 86.3
arahy.Tifrunner.gnm1.ann1.WN1LH4 Arachis hypogaea HOM05D004063 ORTHO05D005326 2.5e-26 122.9 122 55.7
Cc07_g21170 Coffea canephora HOM05D004063 ORTHO05D005326 3.2e-21 105.9 55 83.6
Rhsim13G0010800 Rhododendron simsii HOM05D000068 ORTHO05D000084 2.1e-17 93.2 84 57.1
SalBow5G1320 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.1e-12 76.6 56 73.2
SalBow5G5369 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.0e-12 75.1 37 91.9
arahy.Tifrunner.gnm1.ann1.PZHE2U Arachis hypogaea HOM05D004063 ORTHO05D005326 1.9e-10 70.1 117 44.4
AagrBONN_evm.TU.Sc2ySwM_117.93 Anthoceros agrestis HOM05D004063 ORTHO05D005326 2.8e-09 66.2 37 81.1
Cpa.g.sc801.1 Carica papaya HOM05D004063 ORTHO05D005326 2.8e-09 66.2 76 53.9


User provided reference genes

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