Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.0e-128 461.8 232 100.0
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.2e-95 353.6 209 85.6
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 4.4e-95 351.7 214 83.6
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.6e-84 316.6 279 63.4
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 1.0e-75 287.3 184 79.3
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 2.6e-63 246.1 212 59.4
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 1.2e-60 237.3 212 58.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 3.0e-59 232.6 212 56.6
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 5.1e-59 231.9 212 56.6
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 5.1e-59 231.9 212 55.2
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.6e-59 231.5 212 58.5
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 1.9e-58 229.9 216 56.0
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 5.6e-58 228.4 212 53.8
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 7.3e-58 228.0 212 58.0
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.3e-58 228.0 212 57.5
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 2.8e-57 226.1 208 57.7
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.1e-56 224.2 211 56.9
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.8e-56 223.4 212 56.1
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-56 223.0 212 56.1
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-56 223.0 213 54.9
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 4.0e-56 222.2 215 54.4
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.2e-56 221.9 212 56.1
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 6.9e-56 221.5 213 56.8
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 9.0e-56 221.1 212 54.7
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 9.0e-56 221.1 210 56.2
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.2e-55 220.7 214 55.6
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.0e-55 219.9 213 57.3
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.9e-55 217.6 213 54.5
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 9.9e-55 217.6 213 54.5
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.7e-54 216.9 215 52.6
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.9e-54 216.1 216 56.0
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 6.4e-54 214.9 200 59.0
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.1e-53 214.2 217 53.9
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.4e-53 213.8 214 56.5
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.4e-53 213.8 212 51.9
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.9e-53 213.4 212 53.3
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 2.4e-53 213.0 211 53.6
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 5.4e-53 211.8 223 52.5
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 7.1e-53 211.5 211 57.3
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 1.2e-52 210.7 250 48.8
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 2.1e-52 209.9 215 53.5
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 2.7e-52 209.5 216 52.3
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 4.6e-52 208.8 228 52.2
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 7.8e-52 208.0 211 52.6
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.0e-51 207.6 201 57.2
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.0e-51 207.6 212 51.4
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.3e-51 207.2 192 56.8
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 1.3e-51 207.2 211 58.3
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.3e-51 206.5 211 52.6
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 3.0e-51 206.1 216 51.9
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.9e-51 205.7 191 56.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.9e-51 205.7 191 56.5
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.1e-51 205.3 213 53.1
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 6.6e-51 204.9 212 50.9
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.5e-50 203.8 206 55.8
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.5e-50 203.8 192 56.2
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.3e-50 202.6 191 56.0
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.6e-49 200.3 213 50.7
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.8e-49 199.5 213 53.5
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.6e-49 199.1 222 51.8
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 3.6e-49 199.1 182 58.8
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 4.8e-49 198.7 210 53.8
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 6.2e-49 198.4 159 64.2
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 8.1e-49 198.0 210 52.4
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.1e-48 197.6 210 54.3
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-48 197.6 181 58.6
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.4e-48 196.4 179 61.5
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 2.4e-48 196.4 184 57.6
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 4.0e-48 195.7 176 59.1
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 5.3e-48 195.3 144 67.4
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 6.9e-48 194.9 212 51.9
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.2e-47 194.1 216 52.8
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.5e-47 193.7 185 57.8
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 2.0e-47 193.4 186 58.1
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.0e-47 193.4 209 52.6
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 2.0e-47 193.4 178 58.4
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.6e-47 193.0 184 56.0
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.6e-47 193.0 173 59.5
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.5e-47 192.2 213 51.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 5.8e-47 191.8 199 55.8
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.3e-46 190.7 187 56.7
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.3e-46 190.7 176 57.4
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.7e-46 190.3 222 50.5
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 2.2e-46 189.9 210 52.9
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 6.4e-46 188.3 159 61.6
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 8.4e-46 188.0 209 51.2
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 8.4e-46 188.0 190 57.9
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.1e-45 187.6 203 51.2
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.4e-45 187.2 177 58.2
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.4e-45 187.2 141 65.2
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.9e-45 186.8 200 53.0
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 3.2e-45 186.0 213 49.8
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 7.1e-45 184.9 184 54.3
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 9.3e-45 184.5 211 49.8
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 1.6e-44 183.7 187 55.6
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 2.1e-44 183.3 186 53.8
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.5e-44 182.6 177 56.5
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.0e-43 181.0 180 55.0
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.3e-43 180.6 210 51.0
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 2.3e-43 179.9 212 49.1
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.3e-43 179.9 237 46.0
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 3.9e-43 179.1 218 48.2
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.9e-43 179.1 213 48.8
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 5.1e-43 178.7 187 53.5
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 8.7e-43 177.9 200 49.5
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 8.7e-43 177.9 177 57.6
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 1.1e-42 177.6 194 52.6
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.1e-42 177.6 200 51.5
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.5e-42 177.2 191 52.9
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.3e-42 176.0 185 54.6
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.3e-42 176.0 185 54.6
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.1e-41 173.3 226 49.1
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.1e-41 173.3 188 54.8
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 6.2e-41 171.8 189 48.1
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 2.0e-39 166.8 118 71.2
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 7.6e-39 164.9 111 74.8
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.7e-38 163.7 184 53.8
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.2e-38 163.3 196 48.0
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 2.9e-38 162.9 179 53.6
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 3.8e-38 162.5 195 48.7
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.9e-38 162.2 112 73.2
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 6.4e-38 161.8 187 50.3
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 6.4e-38 161.8 191 50.3
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 1.9e-37 160.2 194 46.9
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.9e-37 160.2 176 54.5
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 3.2e-37 159.5 211 46.0
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 4.2e-37 159.1 117 66.7
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 7.1e-37 158.3 116 69.0
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 9.3e-37 157.9 194 51.0
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 9.3e-37 157.9 106 73.6
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.2e-36 157.5 108 74.1
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.2e-36 157.5 154 59.1
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.6e-36 157.1 116 68.1
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 1.6e-36 157.1 116 68.1
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 2.7e-36 156.4 230 43.5
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 3.5e-36 156.0 109 70.6
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 4.6e-36 155.6 103 73.8
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 6.0e-36 155.2 118 66.9
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.0e-35 154.5 192 49.0
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.0e-35 154.5 200 45.5
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.3e-35 154.1 112 68.8
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.3e-35 154.1 158 57.0
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 5.1e-35 152.1 114 68.4
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 5.1e-35 152.1 123 64.2
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 6.7e-35 151.8 154 56.5
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 7.4e-34 148.3 102 72.5
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.6e-33 147.1 168 49.4
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.7e-33 146.0 105 66.7
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.4e-32 144.1 153 52.9
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 9.0e-32 141.4 183 45.9
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 2.9e-30 136.3 83 78.3
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 2.9e-30 136.3 83 78.3
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.1e-29 134.4 125 57.6
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 6.3e-25 118.6 81 69.1
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.8e-24 117.1 178 43.8
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 4.1e-24 115.9 99 57.6
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 4.5e-23 112.5 139 48.9
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 2.1e-20 103.6 148 42.6
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 8.8e-19 98.2 137 45.3
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 8.2e-17 91.7 82 51.2
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.8e-16 90.5 150 43.3
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 9.1e-16 88.2 88 47.7
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.8e-11 73.9 125 36.8
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 5.1e-11 72.4 77 50.6
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.0e-10 70.5 180 31.1
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 3.3e-10 69.7 40 77.5
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 4.5e-07 59.3 43 62.8


User provided reference genes

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