Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 5.5e-133 477.6 239 100.0
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.1e-64 250.8 206 66.0
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 3.2e-64 249.2 305 51.1
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 9.2e-64 247.7 305 51.8
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 3.6e-52 209.1 188 56.9
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 3.6e-52 209.1 188 56.9
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 3.6e-52 209.1 270 50.7
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 2.4e-51 206.5 266 49.6
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 9.9e-50 201.1 268 47.8
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 9.9e-50 201.1 186 55.9
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 6.4e-49 198.4 188 54.8
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.1e-48 197.6 193 53.9
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 1.4e-48 197.2 182 56.0
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 3.2e-48 196.1 184 56.0
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 4.1e-48 195.7 220 50.5
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 4.1e-48 195.7 185 54.6
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 9.2e-48 194.5 190 56.8
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 9.2e-48 194.5 190 56.8
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 9.2e-48 194.5 184 55.4
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 9.2e-48 194.5 184 55.4
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 9.2e-48 194.5 187 54.0
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.6e-47 193.7 184 55.4
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.1e-47 193.4 301 41.9
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 2.7e-47 193.0 185 55.1
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 2.7e-47 193.0 221 46.6
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 2.7e-47 193.0 200 52.5
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 3.5e-47 192.6 190 53.2
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.6e-47 192.2 228 49.6
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 7.8e-47 191.4 178 56.2
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 1.3e-46 190.7 225 49.8
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.3e-46 190.7 217 49.8
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 3.0e-46 189.5 196 52.0
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 3.9e-46 189.1 210 51.0
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 6.6e-46 188.3 179 57.5
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 8.7e-46 188.0 218 49.1
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 8.7e-46 188.0 221 48.4
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 1.1e-45 187.6 239 48.1
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.5e-45 187.2 222 49.5
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.5e-45 187.2 192 52.1
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 2.5e-45 186.4 192 54.7
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 2.1e-44 183.3 183 54.1
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 8.1e-44 181.4 187 50.3
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.4e-43 180.6 186 54.8
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 1.8e-43 180.3 189 50.8
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.8e-43 180.3 207 47.3
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.1e-43 179.5 182 52.7
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 3.1e-43 179.5 178 51.7
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 4.0e-43 179.1 182 52.7
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 5.2e-43 178.7 178 51.1
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 5.2e-43 178.7 178 51.1
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 5.2e-43 178.7 194 49.0
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 6.9e-43 178.3 170 57.1
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 9.0e-43 177.9 262 45.4
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.5e-42 177.2 186 53.8
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.0e-42 176.8 181 51.4
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 2.6e-42 176.4 209 46.9
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 4.4e-42 175.6 186 52.2
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 4.4e-42 175.6 181 50.8
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 2.2e-41 173.3 184 51.6
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 2.2e-41 173.3 188 50.5
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.9e-41 172.9 188 50.0
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.9e-41 172.9 188 50.5
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 4.9e-41 172.2 210 45.7
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.9e-41 172.2 180 52.2
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 6.4e-41 171.8 177 55.4
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 6.4e-41 171.8 188 50.5
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 6.4e-41 171.8 188 49.5
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 6.4e-41 171.8 219 44.3
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 8.4e-41 171.4 181 49.7
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.1e-40 171.0 183 53.6
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.1e-40 171.0 184 48.4
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.1e-40 171.0 192 50.5
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 1.4e-40 170.6 188 47.3
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.4e-40 170.6 182 52.2
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 3.2e-40 169.5 194 48.5
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 5.4e-40 168.7 182 47.8
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 5.4e-40 168.7 192 53.6
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 7.1e-40 168.3 214 44.9
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 7.1e-40 168.3 186 48.4
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.2e-39 167.5 187 47.6
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.7e-39 166.4 207 45.9
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 3.5e-39 166.0 176 52.3
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 4.6e-39 165.6 213 44.6
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 4.6e-39 165.6 184 48.4
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 6.0e-39 165.2 180 49.4
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 6.0e-39 165.2 187 47.1
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 6.0e-39 165.2 181 49.7
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 7.8e-39 164.9 179 49.2
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.3e-38 164.1 194 48.5
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 2.3e-38 163.3 168 54.2
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 6.6e-38 161.8 176 50.0
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.5e-37 159.8 231 44.2
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 9.6e-37 157.9 194 46.9
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 9.6e-37 157.9 186 46.8
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 3.6e-36 156.0 201 44.8
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 6.2e-36 155.2 176 48.9
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.1e-35 154.5 271 41.0
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 1.2e-34 151.0 194 42.8
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 1.5e-34 150.6 228 42.1
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 2.0e-34 150.2 203 46.3
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 2.6e-34 149.8 251 40.2
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 3.4e-34 149.4 233 41.2
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 4.5e-34 149.1 172 50.0
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.3e-33 147.5 213 44.6
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.7e-33 147.1 177 46.9
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 1.7e-33 147.1 257 39.3
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.2e-33 146.7 197 44.2
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 2.9e-33 146.4 154 51.3
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 2.9e-33 146.4 174 48.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 8.4e-33 144.8 169 48.5
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 8.4e-33 144.8 257 40.9
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 8.4e-33 144.8 159 49.7
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-32 144.1 120 54.2
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 3.2e-32 142.9 177 46.3
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 4.2e-32 142.5 218 40.4
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.2e-31 141.0 233 39.9
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 6.0e-31 138.7 255 37.3
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 6.0e-31 138.7 239 39.3
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.3e-28 131.0 177 45.2
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.6e-28 130.6 244 40.2
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.1e-27 127.9 174 42.0
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 3.1e-27 126.3 187 38.0
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 3.8e-25 119.4 107 57.9
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 5.1e-22 109.0 185 39.5
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.1e-21 107.8 209 37.3
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 1.8e-19 100.5 115 49.6
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.0e-18 97.1 142 36.6
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.8e-18 95.5 142 37.3
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 7.4e-13 78.6 164 28.7
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 9.0e-11 71.6 166 31.3
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 7.7e-10 68.6 89 39.3
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.0e-09 68.2 165 32.1
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.2e-09 67.0 166 30.7
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.4e-08 64.3 160 29.4
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 3.0e-06 56.6 96 37.5
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 8.8e-06 55.1 162 27.2


User provided reference genes

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