Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1471.8 799 100.0
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1358.6 802 91.0
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1353.2 801 90.3
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1322.0 845 85.3
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1203.0 805 77.8
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1194.1 801 77.0
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1185.6 797 76.7
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1174.5 800 76.2
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1173.3 781 78.2
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1173.3 801 75.9
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1172.9 795 78.5
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1171.8 793 75.7
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1166.0 801 76.0
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1162.9 799 75.1
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1161.4 816 75.5
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1157.9 800 74.4
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1156.7 805 75.0
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1155.6 799 76.8
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1155.6 809 76.4
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1148.3 802 75.4
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1147.9 808 74.8
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1142.1 814 72.7
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1142.1 802 75.7
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1140.6 804 74.4
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1139.4 791 76.6
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1137.9 791 74.1
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1137.5 874 71.3
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1135.9 806 73.0
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1135.9 798 75.4
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1135.2 757 77.7
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1133.6 809 74.4
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1133.2 798 75.2
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1128.6 840 71.3
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1123.6 813 72.9
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1123.6 812 73.9
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1123.2 804 75.7
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1121.7 812 74.6
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1119.8 815 72.4
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1114.8 803 72.7
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1114.8 799 72.1
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1109.4 796 72.4
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1108.2 804 71.8
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1108.2 796 73.5
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 803 72.4
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1106.3 803 72.2
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1103.6 799 72.5
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1100.5 795 71.7
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1099.0 799 72.0
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1096.3 899 68.2
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1094.7 798 71.3
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 799 71.2
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1091.3 788 71.7
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 798 71.6
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1084.3 800 70.1
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1080.5 804 70.1
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1079.3 788 71.6
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 800 72.5
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 788 71.3
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 5.5e-312 1073.9 792 70.2
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 2.4e-310 1068.5 793 70.2
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 7.1e-310 1067.0 795 69.9
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.2e-309 1066.2 822 69.2
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.6e-309 1065.8 795 71.3
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 3.5e-309 1064.7 808 69.1
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 801 69.9
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 805 69.6
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 2.3e-308 1062.0 796 68.7
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 3.9e-308 1061.2 805 71.8
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 6.6e-308 1060.4 805 68.7
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 8.6e-308 1060.1 791 70.0
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 2.5e-307 1058.5 789 70.8
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 3.3e-307 1058.1 788 70.1
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 3.3e-307 1058.1 788 70.1
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 2.1e-306 1055.4 812 67.5
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 2.8e-306 1055.0 813 67.7
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 3.6e-306 1054.7 787 70.5
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 6.2e-306 1053.9 787 70.5
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 6.2e-306 1053.9 787 70.5
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.4e-305 1052.7 764 72.1
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.8e-305 1052.4 804 69.4
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 4.0e-305 1051.2 801 68.7
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 3.4e-304 1048.1 796 68.0
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 7.1e-302 1040.4 790 67.5
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 7.1e-302 1040.4 647 81.9
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 3.9e-300 1034.6 797 67.6
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 6.6e-300 1033.9 805 68.0
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.1e-298 1028.9 647 81.5
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.4e-297 1025.4 796 68.0
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 2.4e-297 1025.4 794 66.6
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.4e-296 1021.5 647 81.0
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 3.2e-294 1015.0 803 69.9
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.5e-291 1006.1 792 67.2
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 6.2e-290 1000.7 801 66.7
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 6.9e-289 997.3 796 67.6
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 7.1e-286 987.3 782 66.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 2.8e-282 975.3 789 66.4
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 2.4e-281 972.2 787 66.1
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.1e-277 959.1 803 64.1
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 3.9e-276 954.9 787 65.6
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 5.8e-272 941.0 801 63.2
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 4.9e-271 937.9 784 64.0
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 9.3e-270 933.7 843 60.3
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.5e-267 926.4 788 63.3
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.9e-262 909.4 812 59.5
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 4.2e-262 908.3 779 64.4
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 2.5e-259 899.0 789 63.0
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.2e-250 869.4 710 67.5
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.2e-250 869.4 794 60.1
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 4.8e-250 868.2 815 57.3
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 1.0e-247 860.5 827 57.8
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.3e-244 849.4 793 56.0
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.8e-233 813.1 638 68.3
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.3e-220 769.6 655 64.7
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 2.7e-208 729.6 480 78.8
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 6.6e-207 724.9 813 49.8
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.6e-189 666.0 850 45.3
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.6e-189 666.0 850 45.3
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 2.2e-178 630.2 877 43.1
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.6e-173 612.8 621 56.0
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.5e-171 607.4 846 42.7
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.2e-168 597.8 654 50.5
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 5.6e-166 589.0 532 60.9
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 9.9e-163 578.2 459 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 6.4e-162 575.5 832 42.4
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 3.7e-157 559.7 434 66.6
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 1.3e-151 541.2 594 51.7
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 7.9e-136 488.8 405 65.4
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 5.9e-107 392.9 449 52.6
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 2.9e-106 390.6 617 42.9
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 3.1e-87 327.4 213 80.3
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.3e-82 312.0 693 35.2
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 5.2e-79 300.1 765 31.8
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 3.3e-73 280.8 207 69.6
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 3.4e-70 270.8 197 70.1
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 4.4e-70 270.4 197 70.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 4.4e-70 270.4 197 70.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 1.6e-67 261.9 211 64.5
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 8.6e-66 256.1 236 59.3
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 7.8e-59 233.0 480 38.1
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.3e-57 227.3 451 36.6
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 9.3e-52 209.5 131 83.2
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 3.0e-50 204.5 121 79.3
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 9.6e-41 172.9 151 62.3
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.3e-40 172.6 198 52.0
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.0e-39 167.5 87 85.1
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.0e-39 167.5 87 85.1
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.5e-38 165.6 91 83.5
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.9e-31 140.2 338 32.0
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.0e-29 136.3 166 45.2
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.6e-27 127.5 107 62.6
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 3.9e-26 124.4 89 62.9
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 7.7e-22 110.2 72 69.4
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 2.9e-21 108.2 75 77.3
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-20 106.3 74 68.9
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.2e-20 104.4 108 52.8
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.3e-18 98.6 113 43.4
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 2.0e-17 95.5 57 87.7
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.7e-17 94.0 85 56.5
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.1e-15 89.7 113 46.9
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 2.6e-14 85.1 59 62.7
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 3.8e-13 81.3 51 72.5
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 6.5e-13 80.5 77 54.5
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.9e-12 79.0 128 36.7
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 2.0e-09 68.9 52 73.1
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 9.7e-09 66.6 52 63.5
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 3.7e-08 64.7 105 41.9
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 6.3e-08 63.9 52 69.2
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 2.4e-07 62.0 122 39.3
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 7.0e-07 60.5 51 64.7
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 9.1e-07 60.1 65 56.9
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.7e-06 57.0 247 27.5


User provided reference genes

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