Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 0.0e+00 1718.0 908 100.0
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 0.0e+00 1372.5 972 77.2
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 0.0e+00 1362.8 970 76.6
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 0.0e+00 1357.8 971 77.0
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 9.9e-260 900.6 963 54.5
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 4.9e-259 898.3 1000 51.6
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 7.1e-258 894.4 950 53.9
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 2.1e-257 892.9 1000 52.5
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 5.1e-256 888.3 955 53.6
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 2.5e-255 885.9 934 54.3
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 7.4e-255 884.4 978 52.8
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 1.8e-253 879.8 943 54.3
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.2e-251 872.8 934 54.9
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 1.4e-250 870.2 951 54.8
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 5.5e-250 868.2 936 54.3
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.2e-249 867.1 975 52.8
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.6e-249 866.7 932 54.2
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 3.9e-248 862.1 943 52.3
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 8.7e-248 860.9 935 54.0
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.5e-247 860.1 931 54.6
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 4.3e-247 858.6 930 54.3
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 5.7e-247 858.2 991 51.2
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 5.7e-247 858.2 944 53.2
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 5.7e-247 858.2 936 54.3
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 2.1e-246 856.3 949 53.0
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 4.1e-245 852.0 949 52.4
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 6.9e-245 851.3 950 52.9
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.2e-244 850.5 939 52.4
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 7.6e-244 847.8 960 50.4
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 8.4e-243 844.3 949 52.2
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 1.1e-242 844.0 990 51.5
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 3.0e-240 835.9 934 52.7
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 8.7e-240 834.3 943 51.1
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.5e-239 832.8 983 50.7
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 9.7e-239 830.9 962 50.5
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 6.9e-237 824.7 962 52.5
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 6.9e-237 824.7 986 49.7
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.2e-236 823.9 986 49.2
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.2e-236 823.9 1018 48.0
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 3.4e-236 822.4 990 48.7
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 7.7e-236 821.2 1003 48.8
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 2.9e-235 819.3 954 51.7
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.9e-235 819.3 948 51.4
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 6.5e-235 818.1 929 51.3
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 6.5e-235 818.1 814 55.2
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 3.2e-234 815.8 957 50.9
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.2e-233 813.9 950 51.3
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 4.6e-233 812.0 937 51.5
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 3.0e-232 809.3 977 49.3
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.0e-231 806.6 977 49.8
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 2.5e-231 806.2 925 49.8
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 2.5e-231 806.2 942 50.1
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 2.8e-230 802.7 959 48.7
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.7e-230 802.4 937 50.3
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 4.8e-230 802.0 1027 47.3
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 3.1e-229 799.3 793 56.2
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 4.5e-228 795.4 1042 47.0
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 5.9e-228 795.0 948 49.1
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 2.2e-227 793.1 949 49.0
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 1.1e-223 780.8 943 49.1
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 7.4e-223 778.1 947 49.0
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.3e-222 777.3 957 47.6
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 2.2e-222 776.5 678 58.8
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 3.7e-222 775.8 931 49.8
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 4.8e-222 775.4 991 47.6
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 8.2e-222 774.6 1003 48.1
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.4e-221 773.9 913 49.0
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.8e-221 773.5 1078 45.0
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 5.3e-221 771.9 875 51.9
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 5.3e-221 771.9 887 51.4
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 1.2e-220 770.8 943 49.5
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.6e-220 769.6 979 47.6
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.3e-219 767.3 1006 48.0
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 2.2e-219 766.5 1021 46.1
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 5.0e-219 765.4 929 48.9
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 3.2e-218 762.7 955 47.7
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.2e-217 760.8 979 46.6
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 1.0e-216 757.7 942 48.6
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 1.8e-216 756.9 944 48.4
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 1.8e-216 756.9 867 49.8
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 6.7e-216 755.0 919 48.6
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 2.0e-215 753.4 938 48.3
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 2.6e-215 753.1 996 46.6
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 4.4e-215 752.3 677 58.1
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 7.5e-215 751.5 969 46.6
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.6e-212 743.8 662 58.3
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 5.9e-212 741.9 742 54.2
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 5.9e-212 741.9 973 46.9
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 1.7e-211 740.3 755 51.5
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 6.5e-211 738.4 923 48.3
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 1.5e-210 737.3 922 48.4
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 1.9e-210 736.9 734 53.8
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 4.7e-209 732.3 922 47.6
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 8.0e-209 731.5 922 47.8
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 8.0e-209 731.5 673 58.2
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.4e-208 730.7 760 52.8
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 3.0e-208 729.6 941 46.3
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 5.2e-208 728.8 678 57.4
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 3.1e-205 719.5 941 46.3
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 4.1e-205 719.2 931 46.5
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 9.1e-205 718.0 960 46.1
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 9.1e-205 718.0 689 57.5
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 9.1e-205 718.0 958 46.7
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 2.7e-204 716.5 1010 43.8
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 7.2e-202 708.4 945 46.3
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 3.5e-196 689.5 947 45.9
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 9.8e-191 671.4 919 45.3
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 2.7e-188 663.3 658 52.6
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 3.1e-184 649.8 927 44.4
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 4.0e-184 649.4 924 43.3
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 2.0e-183 647.1 693 50.4
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.1e-181 641.3 730 50.7
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 7.8e-180 635.2 754 47.9
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 9.2e-165 585.1 788 45.8
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 7.8e-164 582.0 785 45.1
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 6.0e-156 555.8 699 44.1
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 2.7e-148 530.4 675 44.4
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 9.6e-146 521.9 850 40.8
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 9.3e-133 478.8 706 44.2
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 5.9e-127 459.5 672 40.9
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 9.4e-101 372.5 661 35.4
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.2e-98 365.5 577 37.6
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.2e-97 361.3 759 33.1
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 6.3e-97 359.8 307 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 1.5e-90 338.6 451 40.6
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.4e-35 156.0 115 62.6
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 4.0e-35 154.5 407 28.7
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 5.8e-34 150.6 115 62.6
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 4.9e-25 120.9 326 37.7
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.9e-24 119.0 177 41.8
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 8.7e-22 110.2 145 45.5
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 4.3e-13 81.3 134 43.3
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 5.7e-13 80.9 134 43.3
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.1e-11 76.6 81 49.4
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 2.6e-10 72.0 81 48.1
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 5.0e-09 67.8 65 58.5
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 3.6e-07 61.6 80 46.2


User provided reference genes

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