Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 3.7e-275 951.0 519 100.0
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 2.8e-81 307.0 475 49.3
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 2.9e-46 190.7 470 39.1
MELO3C005394.2 Cucumis melo HOM05D003765 ORTHO05D004561 3.4e-39 167.2 439 39.2
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 4.4e-26 123.6 624 26.9
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 9.7e-26 122.5 620 26.3
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 9.7e-26 122.5 553 28.0
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.7e-25 120.6 628 27.4
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 1.1e-24 119.0 663 28.1
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.4e-24 117.9 613 26.1
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.1e-24 117.5 591 27.4
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.3e-24 116.7 617 27.7
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 9.1e-24 115.9 617 27.7
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 1.2e-23 115.5 526 32.1
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.2e-23 115.5 617 27.6
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 5.9e-23 113.2 626 27.3
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 7.7e-23 112.8 573 26.5
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.0e-22 112.5 573 26.2
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 6.5e-22 109.8 575 28.5
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 8.5e-22 109.4 555 32.4
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.1e-21 109.0 508 28.7
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 2.5e-21 107.8 515 28.3
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 3.2e-21 107.5 512 25.8
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 7.2e-21 106.3 544 26.3
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 1.2e-20 105.5 618 27.3
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 2.1e-20 104.8 589 27.5
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 4.7e-20 103.6 526 27.4
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 6.1e-20 103.2 602 27.4
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 1.0e-19 102.4 607 28.2
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 1.4e-19 102.1 586 27.1
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 2.3e-19 101.3 586 27.0
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 3.0e-19 100.9 582 27.3
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 5.2e-19 100.1 581 27.5
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 8.8e-19 99.4 648 28.1
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.1e-18 99.0 578 26.1
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 2.0e-18 98.2 623 26.5
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 2.0e-18 98.2 588 26.4
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.6e-18 97.8 592 27.2
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 7.4e-18 96.3 593 27.2
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.3e-17 95.5 527 26.0
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 1.7e-17 95.1 661 25.1
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 1.7e-17 95.1 529 25.9
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.2e-17 94.7 600 25.0
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 2.8e-17 94.4 555 27.6
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 2.8e-17 94.4 601 26.5
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 3.7e-17 94.0 237 37.1
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 3.7e-17 94.0 649 27.3
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 4.8e-17 93.6 637 26.2
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 6.3e-17 93.2 526 26.8
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 6.3e-17 93.2 658 24.9
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 1.8e-16 91.7 605 27.8
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 1.8e-16 91.7 626 25.6
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 3.1e-16 90.9 578 27.7
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 3.1e-16 90.9 592 27.9
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.1e-16 90.9 574 27.2
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.1e-16 90.9 650 24.5
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 7.0e-16 89.7 595 28.1
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 9.1e-16 89.4 621 24.0
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 3.5e-15 87.4 644 24.4
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 3.5e-15 87.4 251 31.1
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 4.5e-15 87.0 532 26.3
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 4.5e-15 87.0 658 25.5
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 5.9e-15 86.7 653 25.9
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 5.9e-15 86.7 493 26.6
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 1.0e-14 85.9 565 26.7
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 1.3e-14 85.5 551 26.3
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.7e-14 85.1 654 25.5
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 2.9e-14 84.3 554 24.5
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 6.5e-14 83.2 661 25.0
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 6.5e-14 83.2 489 26.0
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 8.5e-14 82.8 272 33.8
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 8.5e-14 82.8 535 26.9
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 1.1e-13 82.4 705 24.8
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.1e-13 82.4 664 25.2
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 1.1e-13 82.4 645 24.8
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 3.2e-13 80.9 600 25.3
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 5.5e-13 80.1 663 25.2
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 7.2e-13 79.7 498 24.9
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 7.2e-13 79.7 528 27.1
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 9.4e-13 79.3 638 21.9
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 9.4e-13 79.3 635 26.3
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.1e-12 78.2 726 25.6
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 2.1e-12 78.2 246 32.9
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 2.1e-12 78.2 576 25.7
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 3.6e-12 77.4 663 24.6
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 8.0e-12 76.3 622 25.2
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 8.0e-12 76.3 582 24.4
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 1.0e-11 75.9 623 26.3
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 1.4e-11 75.5 622 26.7
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 2.3e-11 74.7 594 26.1
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 2.3e-11 74.7 162 39.5
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 2.3e-11 74.7 177 35.0
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 3.0e-11 74.3 182 35.7
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 3.0e-11 74.3 220 34.1
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 3.0e-11 74.3 196 33.2
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 4.0e-11 73.9 643 24.4
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 6.7e-11 73.2 241 30.7
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 8.8e-11 72.8 628 24.8
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 1.2e-10 72.4 608 23.7
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.2e-10 72.4 643 24.7
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 2.6e-10 71.2 643 22.4
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 3.3e-10 70.9 708 22.7
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 5.7e-10 70.1 152 38.2
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 5.7e-10 70.1 498 24.7
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 5.7e-10 70.1 168 35.1
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 9.7e-10 69.3 182 31.3
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 9.7e-10 69.3 615 24.1
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 2.2e-09 68.2 212 32.5
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 2.2e-09 68.2 133 42.9
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 2.8e-09 67.8 197 36.5
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 2.8e-09 67.8 165 32.7
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.8e-09 67.8 179 37.4
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 3.7e-09 67.4 159 36.5
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 6.3e-09 66.6 162 35.2
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 6.3e-09 66.6 529 24.8
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 8.2e-09 66.2 627 24.1
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 1.1e-08 65.9 580 22.6
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 1.1e-08 65.9 202 36.1
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 1.1e-08 65.9 596 24.2
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 1.8e-08 65.1 212 33.0
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 1.8e-08 65.1 212 33.0
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 1.8e-08 65.1 539 24.5
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 2.4e-08 64.7 202 35.6
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.1e-08 64.3 150 38.0
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 4.1e-08 63.9 197 35.0
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 4.1e-08 63.9 151 39.7
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 4.1e-08 63.9 641 23.6
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 5.3e-08 63.5 628 24.8
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 9.1e-08 62.8 197 36.0
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 9.1e-08 62.8 172 36.0
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 1.6e-07 62.0 219 34.7
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 1.6e-07 62.0 173 32.9
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 3.5e-07 60.8 617 22.5
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 5.9e-07 60.1 120 40.8
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 7.7e-07 59.7 93 47.3
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 7.7e-07 59.7 93 47.3
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 7.7e-07 59.7 168 38.1
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 2.9e-06 57.8 160 35.6
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 3.8e-06 57.4 96 46.9
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 3.8e-06 57.4 96 46.9
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 3.8e-06 57.4 96 46.9
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 3.8e-06 57.4 213 30.5
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.8e-06 57.4 565 23.4
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 6.5e-06 56.6 247 27.5
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 8.5e-06 56.2 330 25.2


User provided reference genes

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