Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.2e-66 258.1 404 100.0
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.8e-43 181.0 119 80.7
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 9.8e-42 175.3 121 77.7
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 4.9e-41 172.9 141 79.4
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 4.1e-24 116.7 118 51.7
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 6.6e-22 109.4 92 57.6
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 1.9e-21 107.8 118 49.2
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 2.5e-21 107.5 109 47.7
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 5.6e-21 106.3 85 60.0
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 9.5e-21 105.5 117 44.4
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 3.6e-20 103.6 119 49.6
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 4.7e-20 103.2 103 47.6
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.4e-19 101.7 108 50.0
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 2.4e-19 100.9 82 61.0
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.4e-19 100.9 82 61.0
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 8.9e-19 99.0 82 59.8
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 8.9e-19 99.0 97 52.6
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 8.9e-19 99.0 115 47.8
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 8.9e-19 99.0 115 47.8
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 2.0e-18 97.8 129 45.7
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.4e-18 96.7 119 47.1
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 7.6e-18 95.9 88 56.8
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 9.9e-18 95.5 87 56.3
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.3e-17 95.1 87 55.2
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 1.7e-17 94.7 108 50.9
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 1.7e-17 94.7 79 60.8
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 2.2e-17 94.4 97 48.5
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 2.9e-17 94.0 115 47.0
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 3.8e-17 93.6 84 58.3
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 4.9e-17 93.2 115 48.7
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 6.4e-17 92.8 119 46.2
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 6.4e-17 92.8 117 46.2
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 1.9e-16 91.3 121 43.8
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 2.4e-16 90.9 79 48.1
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.4e-16 90.9 116 42.2
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 4.2e-16 90.1 120 43.3
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 9.2e-16 89.0 103 49.5
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 9.2e-16 89.0 87 55.2
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.2e-15 88.6 120 46.7
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 1.6e-15 88.2 92 54.3
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.1e-15 87.8 92 48.9
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 2.1e-15 87.8 112 45.5
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 2.1e-15 87.8 106 51.9
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 2.1e-15 87.8 67 61.2
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 4.6e-15 86.7 117 41.9
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 6.0e-15 86.3 91 48.4
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 6.0e-15 86.3 118 41.5
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 7.8e-15 85.9 103 45.6
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.3e-14 85.1 108 44.4
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 1.7e-14 84.7 85 52.9
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.7e-14 84.7 116 47.4
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 1.7e-14 84.7 67 62.7
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 3.9e-14 83.6 100 46.0
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 3.9e-14 83.6 78 55.1
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 5.1e-14 83.2 89 50.6
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 5.1e-14 83.2 67 62.7
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 6.6e-14 82.8 118 41.5
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 8.7e-14 82.4 89 48.3
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 1.1e-13 82.0 85 55.3
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 1.1e-13 82.0 116 40.5
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 1.9e-13 81.3 100 46.0
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.3e-13 80.5 90 47.8
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 5.6e-13 79.7 100 44.0
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 5.6e-13 79.7 85 48.2
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 7.3e-13 79.3 72 58.3
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 9.6e-13 79.0 109 43.1
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 1.2e-12 78.6 89 50.6
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.2e-12 78.6 107 46.7
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.2e-12 78.6 84 50.0
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.6e-12 78.2 83 50.6
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 2.1e-12 77.8 64 56.2
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 3.6e-12 77.0 82 47.6
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 3.6e-12 77.0 82 47.6
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 3.6e-12 77.0 82 52.4
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 3.6e-12 77.0 90 48.9
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 4.7e-12 76.6 83 44.6
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 4.7e-12 76.6 82 50.0
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 4.7e-12 76.6 82 51.2
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 6.2e-12 76.3 82 50.0
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 8.1e-12 75.9 75 57.3
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 1.4e-11 75.1 82 47.6
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 1.4e-11 75.1 82 47.6
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 1.4e-11 75.1 79 54.4
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.8e-11 74.7 79 48.1
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.4e-11 74.3 87 49.4
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 2.4e-11 74.3 85 45.9
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 3.1e-11 73.9 117 43.6
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 3.1e-11 73.9 78 50.0
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 3.1e-11 73.9 95 45.3
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 4.0e-11 73.6 95 46.3
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 5.3e-11 73.2 78 47.4
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 5.3e-11 73.2 65 60.0
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 5.3e-11 73.2 66 51.5
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 5.3e-11 73.2 81 45.7
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 6.9e-11 72.8 71 53.5
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 9.0e-11 72.4 78 48.7
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 9.0e-11 72.4 91 45.1
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 9.0e-11 72.4 85 47.1
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 9.0e-11 72.4 91 40.7
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 9.0e-11 72.4 90 46.7
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 9.0e-11 72.4 96 43.8
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.2e-10 72.0 66 57.6
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.2e-10 72.0 79 46.8
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 1.2e-10 72.0 62 51.6
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 1.5e-10 71.6 55 58.2
PGSC0003DMG400030778 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.5e-10 71.6 65 49.2
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 1.5e-10 71.6 85 41.2
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 2.0e-10 71.2 115 41.7
Nitab4.5_0004770g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.0e-10 71.2 119 41.2
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.0e-10 71.2 87 46.0
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.6e-10 70.9 65 58.5
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 3.4e-10 70.5 90 51.1
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 3.4e-10 70.5 91 39.6
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 3.4e-10 70.5 79 41.8
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 4.4e-10 70.1 58 60.3
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 4.4e-10 70.1 89 43.8
Nitab4.5_0000299g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.4e-10 70.1 80 50.0
Solyc03g033280.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 5.8e-10 69.7 82 48.8
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 7.6e-10 69.3 90 42.2
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 7.6e-10 69.3 80 53.8
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 1.3e-09 68.6 78 47.4
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.3e-09 68.6 88 38.6
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 1.7e-09 68.2 74 50.0
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 2.9e-09 67.4 86 44.2
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 4.9e-09 66.6 75 44.0
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 4.9e-09 66.6 75 44.0
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 4.9e-09 66.6 108 42.6
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 6.4e-09 66.2 55 58.2
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 6.4e-09 66.2 88 38.6
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 8.4e-09 65.9 86 44.2
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.1e-08 65.5 55 56.4
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 1.4e-08 65.1 65 52.3
CAN.G833.1 Capsicum annuum HOM05D003899 ORTHO05D003655 1.4e-08 65.1 48 60.4
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 1.4e-08 65.1 67 50.7
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 2.4e-08 64.3 83 44.6
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.2e-08 63.9 121 39.7
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 4.2e-08 63.5 92 40.2
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 4.2e-08 63.5 87 43.7
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 4.2e-08 63.5 47 59.6
Sopen06g019720 Solanum pennellii HOM05D003899 ORTHO05D003655 4.2e-08 63.5 73 46.6
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 7.1e-08 62.8 91 39.6
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 7.1e-08 62.8 115 34.8
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 1.2e-07 62.0 83 44.6
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.6e-07 61.6 78 44.9
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 2.7e-07 60.8 71 42.3
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 3.5e-07 60.5 55 52.7
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 4.6e-07 60.1 52 50.0
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 6.0e-07 59.7 88 36.4
AUR62007209 Chenopodium quinoa HOM05D003899 ORTHO05D003655 7.8e-07 59.3 86 39.5
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 1.0e-06 58.9 106 39.6
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.7e-06 58.2 84 41.7
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 1.7e-06 58.2 71 45.1
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.7e-06 58.2 83 36.1
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 2.3e-06 57.8 76 44.7
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.3e-06 57.8 98 33.7
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 3.0e-06 57.4 81 40.7
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 3.9e-06 57.0 103 36.9
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 5.1e-06 56.6 95 38.9
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 5.1e-06 56.6 84 38.1
THA.LOC104827412 Tarenaya hassleriana HOM05D009119 ORTHO05D003655 5.1e-06 56.6 86 45.3
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.6e-06 56.2 74 37.8
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 8.7e-06 55.8 38 65.8
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 8.7e-06 55.8 59 44.1


User provided reference genes

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