Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 4982.5 2537 100.0
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 4447.9 2544 89.6
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3555.0 2548 71.9
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3515.3 2551 71.1
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3494.9 2546 70.3
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3482.6 2541 71.0
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3466.0 2545 70.7
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3464.5 2543 70.0
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3463.7 2575 69.8
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3461.8 2543 70.0
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3457.2 2547 69.7
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3456.4 2568 70.2
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3455.6 2543 70.5
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 3452.5 2031 87.4
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3440.6 2553 69.8
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3433.3 2563 69.8
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3429.0 2545 69.7
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3429.0 2547 69.4
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3422.9 2539 69.6
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3422.5 2544 69.7
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3417.1 2553 69.3
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3370.1 2539 68.8
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3368.6 2537 68.6
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3365.1 2538 68.8
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3364.7 2581 67.5
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3353.5 2545 68.5
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3348.5 2548 68.3
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3329.3 2600 67.5
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3321.6 2540 67.9
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3313.9 2539 67.7
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3312.3 2553 67.6
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3309.2 2542 67.9
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3309.2 2534 67.6
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3307.7 2542 67.3
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3259.5 2542 66.4
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3222.6 2545 66.7
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3195.2 2557 65.2
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3155.9 2543 64.9
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3150.1 2542 64.6
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3139.0 2548 64.1
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3133.2 2868 59.7
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3131.3 2251 71.3
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3099.3 2552 64.0
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3098.1 2546 63.6
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3096.2 2547 64.0
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3095.4 2545 63.9
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3089.3 2552 63.8
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3088.1 2557 63.4
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3081.6 2548 63.9
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3075.4 2548 63.5
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3075.0 2564 63.4
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3059.6 2561 63.0
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3050.4 2592 63.0
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3036.1 2343 67.4
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3032.3 2542 63.0
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3030.4 2542 63.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3016.1 2574 62.3
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3008.8 2573 62.3
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3007.2 2583 62.1
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 2995.7 2543 61.7
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2913.3 2552 60.7
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2906.7 2549 60.5
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2906.3 2572 60.8
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2897.8 2550 60.9
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2896.3 2087 71.2
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2882.8 2413 63.6
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2865.5 2234 66.8
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2864.7 2550 60.4
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2788.8 1887 75.4
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2738.0 2616 58.0
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2730.7 1871 74.0
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2577.4 1721 75.9
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2484.5 1643 76.6
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2338.5 1839 66.8
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2271.9 2314 53.7
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2165.6 1742 65.1
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2128.6 1774 63.4
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2119.7 1723 65.0
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2045.4 2704 45.0
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1992.6 1693 61.7
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1973.4 2775 43.4
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1655.2 1096 77.6
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1647.9 1178 72.2
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1647.9 2569 40.5
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1646.7 1419 62.3
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1626.3 1145 72.1
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1622.8 1187 70.1
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1517.3 1152 69.4
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1490.3 1143 68.6
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1466.1 2772 36.8
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1418.3 2670 35.5
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1375.5 1499 52.2
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1366.7 1633 48.1
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1356.7 1198 60.4
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1347.4 853 79.0
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1328.9 1174 61.4
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1221.5 1494 48.4
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1200.3 899 66.6
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1176.8 744 78.5
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 0.0e+00 1121.7 675 86.1
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 1.6e-291 1007.7 609 83.9
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.3e-284 983.4 672 74.4
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 6.2e-259 899.4 1134 46.4
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 4.9e-256 889.8 1048 49.8
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.4e-247 861.7 639 70.0
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.6e-241 840.9 1036 48.1
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 5.6e-236 823.2 912 51.8
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.3e-213 748.0 911 48.1
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 2.6e-193 681.4 497 71.2
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.6e-193 681.4 843 49.5
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.1e-191 676.0 740 52.7
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 3.4e-180 637.9 888 44.1
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 4.1e-178 630.9 613 59.5
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.7e-174 617.5 668 50.9
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.3e-163 582.8 668 48.1
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.7e-163 582.4 385 74.0
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.7e-155 555.8 489 60.1
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 1.5e-148 532.7 481 58.8
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.6e-135 487.6 548 51.1
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 5.2e-133 481.1 501 54.1
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 7.9e-113 414.1 476 46.8
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.9e-107 395.6 239 85.4
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 3.2e-106 392.1 265 70.9
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 9.3e-106 390.6 522 43.3
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 3.0e-88 332.4 204 83.3
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.2e-86 326.2 180 85.6
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 8.5e-83 314.3 346 48.8
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.7e-81 309.3 180 80.6
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 2.6e-76 292.7 229 65.1
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 5.0e-75 288.5 219 66.2
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.8e-72 280.0 314 49.7
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 9.7e-71 274.2 151 88.7
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 1.3e-70 273.9 203 67.0
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 4.1e-69 268.9 158 80.4
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 8.5e-67 261.2 232 59.1
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.7e-54 220.3 312 41.3
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 2.8e-54 219.5 310 42.9
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 1.0e-51 211.1 312 41.3
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 3.4e-47 196.1 179 58.1
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.3e-46 194.1 338 37.3
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 1.9e-45 190.3 312 39.7
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 2.7e-44 186.4 1268 24.4
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 9.8e-39 167.9 105 78.1
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 4.1e-37 162.5 116 71.6
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.3e-35 157.5 116 73.3
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.4e-32 147.5 143 54.5
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 8.3e-30 138.3 141 48.9
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 1.0e-27 131.3 101 71.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 1.0e-27 131.3 101 71.3
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 3.9e-27 129.4 85 75.3
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.5e-26 127.5 120 52.5
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 8.1e-25 121.7 138 52.2
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 3.5e-20 106.3 120 53.3
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.6e-17 96.3 129 52.7
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.8e-16 94.0 75 65.3
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 3.1e-16 93.2 93 54.8
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 3.1e-16 93.2 181 35.9
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.5e-15 90.9 278 32.0
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.2e-14 87.0 122 49.2
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.2e-14 87.0 60 71.7
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 2.2e-14 87.0 88 53.4
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 6.4e-14 85.5 57 75.4
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 1.9e-13 84.0 45 91.1
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.1e-12 80.5 74 59.5
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 7.8e-12 78.6 61 67.2
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 7.8e-12 78.6 76 51.3
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.7e-11 77.4 67 56.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.7e-11 77.4 67 56.7
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.5e-10 73.6 66 65.2
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 3.3e-10 73.2 143 36.4
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 5.6e-10 72.4 138 34.8
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 3.6e-09 69.7 51 68.6
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 1.4e-08 67.8 72 51.4
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 5.3e-08 65.9 48 68.8
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 3.4e-07 63.2 104 42.3


User provided reference genes

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